chr11 : 22,491,959 – 22,492,127
168 bp 65 TFs 2 linked genes
This 168 bp open chromatin element is linked to LINC01495 and ENSG00000255357 and is bound by 65 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01495 at TSS At TSS Proximity
ENSG00000255357 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:22,486,959 – 22,497,127
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 126 bp overlap
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 168 bp overlap
ARID2 1 dataset
ChIP NGP GSE134626.ARID2.NGP 51 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 168 bp overlap
BRD4 11 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 168 bp overlap
ChIP HeLa GSE51633.BRD4.HeLa 168 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 130 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 136 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 154 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 168 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 168 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 168 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 149 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 161 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 134 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 168 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 168 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 166 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 168 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 58 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 98 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCFF829RWA 168 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 146 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 133 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 168 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 168 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 168 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 154 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 168 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 168 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 104 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 168 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 168 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 168 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 58 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 168 bp overlap
ChIP SK-N-SH ENCFF285GEQ 168 bp overlap
JUN 1 dataset
ChIP BT-549 GSE46166.JUN.BT-549 163 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 168 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 168 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 168 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 168 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 168 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 168 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 168 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 168 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 167 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 149 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 133 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 138 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 113 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 102 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 168 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 168 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 168 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 162 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 87 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 168 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 127 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 168 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 120 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 168 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 168 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 168 bp overlap
POLR2A 1 dataset
ChIP PFSK-1 ENCFF576NIT 168 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 168 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 168 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 95 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 168 bp overlap
REST 3 datasets
ChIP PFSK-1 ENCFF845VHA 166 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 136 bp overlap
ChIP neural ENCSR000BTV.REST.neural 132 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 168 bp overlap
SIN3A 1 dataset
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 109 bp overlap
SMARCA2 5 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 168 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 168 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 168 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 168 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 99 bp overlap
SMARCA4 10 datasets
ChIP NGP GSE134626.SMARCA4.NGP 168 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 168 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 50 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 81 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 168 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 168 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 122 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 168 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 168 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 168 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 82 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 160 bp overlap
SMC1A-B 2 datasets
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 159 bp overlap
ChIP TC-32 GSE115250.SMC1A-B.TC-32 118 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 168 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 168 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 163 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 111 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 150 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 119 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 168 bp overlap
ChIP SK-N-SH ENCFF270OWF 143 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 168 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 168 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 128 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 168 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 168 bp overlap
TWIST1 7 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 168 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 168 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 168 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 168 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 168 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.TWIST1.SHEP-21N_DOX_24H 168 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 168 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 146 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 81 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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