chr11 : 59,558,035 – 59,558,468
433 bp 112 TFs 2 linked genes
This 433 bp open chromatin element is linked to LINC02739 and ENSG00000255139 and is bound by 112 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02739 2.5 kb Proximal Proximity
ENSG00000255139 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:59,553,035 – 59,563,468
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP K-562 ENCSR426URK.AFF1.K-562 108 bp overlap
ChIP K562 ENCFF583EEH 135 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 375 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 113 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 423 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 433 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 75 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 56 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 151 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 129 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 356 bp overlap
BRD2 8 datasets
ChIP K-562_IBET151_50nM GSE120715.BRD2.K-562_IBET151_50nM 175 bp overlap
ChIP LPS141 GSE111253.BRD2.LPS141 137 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 103 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 310 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 433 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 268 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 301 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 375 bp overlap
BRD3 7 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 433 bp overlap
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 81 bp overlap
ChIP K-562_DMSO GSE120715.BRD3.K-562_DMSO 146 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 188 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 143 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 412 bp overlap
BRD4 15 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 433 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 433 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 63 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 376 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 431 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 78 bp overlap
ChIP LP1_SGCCBP300 GSE71909.BRD4.LP1_SGCCBP300 138 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 433 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 141 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 94 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 359 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 114 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 433 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 220 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 422 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 103 bp overlap
CDK8 4 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 256 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 145 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 70 bp overlap
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 63 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 146 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 157 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 433 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 160 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap
CHD4 3 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 160 bp overlap
ChIP GM12878 ENCSR751CJG.CHD4.GM12878 273 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 218 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 279 bp overlap
CTCF 5 datasets
ChIP 22Rv1 ENCFF466OXN 183 bp overlap
ChIP DOHH2 ENCFF637WNW 60 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 189 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 85 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 155 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 433 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 279 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 285 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 264 bp overlap
GTF3C2 4 datasets
ChIP HeLa-S3 ENCFF144RTV 82 bp overlap
ChIP HeLa-S3 ENCSR000DNY.GTF3C2.HeLa-S3 124 bp overlap
ChIP K-562 ENCSR000DOD.GTF3C2.K-562 150 bp overlap
ChIP T98G_serum GSE120162.GTF3C2.T98G_serum 109 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 76 bp overlap
HMGXB4 3 datasets
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 257 bp overlap
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 392 bp overlap
ChIP WTC11 ENCFF962POR 101 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 433 bp overlap
ChIP K562 ENCFF771OHZ 80 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF238LYK 96 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 433 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 326 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 190 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 141 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 128 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 61 bp overlap
KAT7 1 dataset
ChIP HepG2 ENCFF613PTN 80 bp overlap
KDM1A 3 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 116 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 165 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 176 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 102 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MCRS1 2 datasets
ChIP Huh-7 GSE97411.MCRS1.Huh-7 231 bp overlap
ChIP Huh-7 GSE97411.MCRS1.Huh-7 137 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 170 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 224 bp overlap
ChIP MOLM-14 GSE65138.MED1.MOLM-14 147 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 380 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 132 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 312 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 175 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 308 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 82 bp overlap
MYC 2 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 195 bp overlap
ChIP K562 ENCFF988ZRU 147 bp overlap
MYPOP 1 dataset
ChIP HepG2 ENCFF176TQL 128 bp overlap
NBN 2 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 165 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 220 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 103 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 80 bp overlap
NFRKB 2 datasets
ChIP K-562 ENCSR657EOF.NFRKB.K-562 384 bp overlap
ChIP K562 ENCFF221WAF 54 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 137 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 141 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 433 bp overlap
PHF8 7 datasets
ChIP H1 ENCFF427UFV 286 bp overlap
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 149 bp overlap
ChIP HepG2 ENCFF065NWR 95 bp overlap
ChIP HepG2 ENCFF065NWR 348 bp overlap
ChIP K-562 ENCSR000AQH.PHF8.K-562 108 bp overlap
ChIP K562 ENCFF217UCA 257 bp overlap
ChIP WA01 ENCSR000ATK.PHF8.WA01 81 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 261 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 433 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 433 bp overlap
POLR2A 4 datasets
ChIP K562 ENCFF419GHN 187 bp overlap
ChIP K562 ENCFF836GHX 198 bp overlap
ChIP K562 ENCFF836GHX 402 bp overlap
ChIP erythroblast ENCFF498VMR 98 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF648YPL 50 bp overlap
ChIP K562 ENCFF648YPL 252 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 411 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 57 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 110 bp overlap
Prdm5 1 dataset
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
RBFOX2 3 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 205 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 180 bp overlap
ChIP K562 ENCFF196WTG 336 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REPIN1 2 datasets
ChIP HEK293 ENCSR146NLL.REPIN1.HEK293 93 bp overlap
ChIP HepG2 ENCFF598VSY 94 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 106 bp overlap
RUVBL2 4 datasets
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 108 bp overlap
ChIP U2OS GSE130602.RUVBL2.U2OS 331 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 217 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 319 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 305 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 78 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 167 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 142 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 104 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 139 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 63 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 95 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 286 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 174 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 82 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCFF866POT 67 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 284 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 158 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 201 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 433 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 433 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 95 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 85 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 100 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 433 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 67 bp overlap
ChIP HEK293 ENCFF752TCU 57 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 164 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 182 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 82 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 77 bp overlap
ZKSCAN1 4 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 260 bp overlap
ChIP HepG2 ENCFF578KDY 299 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 347 bp overlap
ChIP K562 ENCFF977CBA 209 bp overlap
ZNF230 1 dataset
ChIP HepG2 ENCFF370ATB 120 bp overlap
ZNF274 2 datasets
ChIP K562 ENCFF187RMG 67 bp overlap
ChIP K562 ENCFF187RMG 268 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 57 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 207 bp overlap
ZNF441 1 dataset
ChIP HEK293T GSE78099.ZNF441.HEK293T 212 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 75 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 244 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 347 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF816 1 dataset
ChIP HepG2 ENCFF294VPD 90 bp overlap
ZNF83 1 dataset
ChIP K562 ENCFF340RTV 225 bp overlap
ZNF850 1 dataset
ChIP HepG2 ENCFF671RTH 240 bp overlap
ZNF878 1 dataset
ChIP HepG2 ENCFF165VOD 143 bp overlap