chr11 : 71,246,399 – 71,246,829
430 bp 102 TFs 3 linked genes
This 430 bp open chromatin element is linked to SHANK2, DHCR7, and NADSYN1 and is bound by 102 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SHANK2 5.7 kb Proximal Proximity
DHCR7 201.8 kb Distal Multiome
NADSYN1 206.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:71,241,399 – 71,251,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 127 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 430 bp overlap
ChIP H1 ENCFF399KAM 430 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 430 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 148 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 282 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 423 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 430 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 163 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 65 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 222 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 250 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 365 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 155 bp overlap
E2F6 1 dataset
ChIP H1 ENCFF785DWK 68 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 224 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 171 bp overlap
ELF2 2 datasets
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELK3 2 datasets
Motif DE_12h DE_12h-ELK3_MA0759.3 9 bp overlap
Motif ES_0h ES_0h-ELK3_MA0759.3 9 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 226 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 257 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 168 bp overlap
ERF::FIGLA 2 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif ES_0h ES_0h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 165 bp overlap
ETS1 4 datasets
ChIP GM23338 ENCFF701IZH 268 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 430 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 130 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 184 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif ES_0h ES_0h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 89 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 197 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 191 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 196 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 274 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 257 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 329 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 430 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 152 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 99 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 170 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 123 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 81 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 81 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 401 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 364 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 372 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 282 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 230 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 142 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 430 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 118 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 220 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 191 bp overlap
ChIP hESC GSE18292.NANOG.hESC 115 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NIPBL 4 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 305 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 195 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 178 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 286 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 399 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 430 bp overlap
ChIP H1 ENCFF566JSR 252 bp overlap
ChIP H1 ENCFF566JSR 358 bp overlap
ChIP H1 ENCFF833NJP 255 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 116 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 264 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 252 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 217 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 215 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 201 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 276 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 430 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 419 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 194 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 430 bp overlap
PRDM14 3 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 384 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 356 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 328 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 237 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 362 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 365 bp overlap
REST 2 datasets
ChIP H1 ENCFF429RUE 189 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 118 bp overlap
RREB1 2 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 174 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 352 bp overlap
SAP30 2 datasets
ChIP WA01 ENCSR000ATR.SAP30.WA01 230 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 153 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 388 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 140 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 151 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 135 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 287 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 205 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 184 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 218 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 399 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 430 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 210 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 179 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 269 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 333 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap
SP1 4 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 254 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 395 bp overlap
ChIP WTC11 ENCFF688PEU 295 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 256 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 260 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 180 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 202 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 117 bp overlap
ChIP hESC GSE122298.TBP.hESC 139 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 218 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 287 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 130 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 226 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 224 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 430 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 309 bp overlap
ChIP H1 ENCFF778PAX 216 bp overlap
TFAP2A 2 datasets
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 181 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TFAP4::ETV1 2 datasets
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Motif ES_0h ES_0h-TFAP4ETV1_MA1966.2 13 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 173 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 146 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7A 2 datasets
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 278 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 282 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 222 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP WTC11 ENCFF551GAV 289 bp overlap
ZNF320 1 dataset
Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 286 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 213 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap