chr11 : 88,336,663 – 88,337,061
398 bp 131 TFs 2 linked genes
This 398 bp open chromatin element is linked to CTSC and ENSG00000288018 and is bound by 131 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CTSC 710 bp At TSS Proximity
ENSG00000288018 825 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:88,331,663 – 88,342,061
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
131 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 232 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 398 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 180 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 160 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BCL11A 2 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 56 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 153 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 160 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 156 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 398 bp overlap
BHLHA15 1 dataset
Motif ES_0h ES_0h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 1 dataset
Motif ES_0h ES_0h-BHLHE22_MA0818.2 10 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 217 bp overlap
BRD2 4 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 179 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 216 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 85 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 398 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO GSE120715.BRD3.K-562_DMSO 222 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 209 bp overlap
BRD4 24 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 136 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 129 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 242 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 251 bp overlap
ChIP COLO-320 GSE73319.BRD4.COLO-320 90 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 398 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 362 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 398 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 298 bp overlap
ChIP K-562_DMSO GSE120715.BRD4.K-562_DMSO 144 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 190 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 386 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 215 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 303 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 188 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 188 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 231 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 378 bp overlap
ChIP SEM GSE83671.BRD4.SEM 328 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 189 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 354 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 398 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 364 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 309 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 194 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE50622.CDK7.Jurkat 294 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 244 bp overlap
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 138 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 269 bp overlap
CHD1 5 datasets
ChIP H1 ENCFF998XEK 170 bp overlap
ChIP H1 ENCFF998XEK 192 bp overlap
ChIP K-562 ENCSR000AQD.CHD1.K-562 155 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 398 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 253 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 163 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 96 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 259 bp overlap
EP400 1 dataset
ChIP K-562 ENCSR817QKV.EP400.K-562 186 bp overlap
EZH2 1 dataset
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 133 bp overlap
FOS 1 dataset
ChIP CD4 GSE116695.FOS.CD4 160 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 158 bp overlap
GATA1 2 datasets
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 302 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 239 bp overlap
GATA5 1 dataset
Motif ES_0h ES_0h-GATA5_MA0766.3 8 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 309 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
GTF2E2 2 datasets
ChIP K562 ENCFF741URT 398 bp overlap
ChIP K562 ENCFF741URT 398 bp overlap
Gata3 1 dataset
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
HDAC1 2 datasets
ChIP K562 ENCFF968WBH 202 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 398 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 398 bp overlap
ChIP K562 ENCFF055GAZ 269 bp overlap
ChIP K562 ENCFF317JJX 269 bp overlap
HSF1 1 dataset
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
HSF4 1 dataset
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 214 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 207 bp overlap
INSM1 1 dataset
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 371 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 326 bp overlap
KDM5B 1 dataset
ChIP K562 ENCFF049WWX 211 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
KMT2A 10 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 238 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 227 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 398 bp overlap
ChIP L826 GSE83671.KMT2A.L826 203 bp overlap
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 152 bp overlap
ChIP MOLM-13_CBS79-KO GSE114981.KMT2A.MOLM-13_CBS79-KO 57 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 398 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 398 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 288 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 331 bp overlap
MAF 1 dataset
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 385 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 124 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 223 bp overlap
ChIP K562 ENCFF455EEO 251 bp overlap
MAFK 6 datasets
ChIP A549 ENCFF371EPR 191 bp overlap
ChIP GM12878 ENCFF605LFT 145 bp overlap
ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 132 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 87 bp overlap
ChIP HepG2 ENCFF743ZOF 137 bp overlap
ChIP IMR-90 ENCFF336DHZ 138 bp overlap
MAX 1 dataset
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 125 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 246 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 188 bp overlap
MLLT1 4 datasets
ChIP GM12878 ENCFF995GXC 77 bp overlap
ChIP K-562 ENCSR675LRO.MLLT1.K-562 58 bp overlap
ChIP MOLM-13 GSE82116.MLLT1.MOLM-13 251 bp overlap
ChIP MV4-11 GSE82116.MLLT1.MV4-11 209 bp overlap
MNT 1 dataset
ChIP K562 ENCFF820IGH 204 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 307 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 264 bp overlap
MXI1 1 dataset
ChIP HeLa-S3 ENCFF947VEL 265 bp overlap
MYC 3 datasets
ChIP K-562 ENCSR000EZU.MYC.K-562 151 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 258 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 231 bp overlap
NFATC2 4 datasets
ChIP CD4 GSE116695.NFATC2.CD4 398 bp overlap
ChIP CD4_CD28-ab GSE116695.NFATC2.CD4_CD28-ab 398 bp overlap
ChIP CD4_fly-DNA GSE116695.NFATC2.CD4_fly-DNA 398 bp overlap
ChIP CD4_fly-DNA_no-CD28 GSE116695.NFATC2.CD4_fly-DNA_no-CD28 343 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif ES_0h ES_0h-NFATC4_MA1525.3 9 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 198 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 153 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 318 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 209 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 398 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 178 bp overlap
POLR2A 1 dataset
ChIP GM18505 ENCFF311CYB 228 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 290 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 398 bp overlap
ChIP K562 ENCFF740YLK 351 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 3 datasets
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 316 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 190 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 70 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 201 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF196WTG 92 bp overlap
RBPJ 2 datasets
ChIP NHEK GSE29498.RBPJ.NHEK 116 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 99 bp overlap
RELA 2 datasets
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 161 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 356 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 142 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 225 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 112 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 249 bp overlap
ChIP H1 ENCFF896IJG 233 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 123 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 124 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 398 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 397 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 320 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 107 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 207 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 65 bp overlap
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 153 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 207 bp overlap
SOX4 2 datasets
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
ChIP HCC1954_TGFb GSE104760.SOX4.HCC1954_TGFb 250 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 264 bp overlap
ChIP K562 ENCFF059YCJ 300 bp overlap
SP3 1 dataset
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 120 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 238 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 227 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 156 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 228 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 175 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 136 bp overlap
TCF21 1 dataset
Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 271 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 278 bp overlap
TRPS1 1 dataset
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 398 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 192 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 219 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 125 bp overlap
ZNF148 2 datasets
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ChIP K562 ENCFF352SDL 398 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 311 bp overlap
ZNF281 2 datasets
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ChIP K562 ENCFF594VNM 308 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 398 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 111 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 97 bp overlap
ZNF384 3 datasets
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ChIP GM12878 ENCFF229VSP 156 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 113 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 241 bp overlap
ZNF664 1 dataset
ChIP HEK293 ENCFF343XSW 137 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 177 bp overlap
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