chr11 : 133,854,269 – 133,855,200
931 bp 98 TFs 2 linked genes
This 931 bp open chromatin element is linked to IGSF9B and JAM3 and is bound by 98 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IGSF9B 102.3 kb Distal Multiome
JAM3 214.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:133,849,269 – 133,860,200
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 222 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 140 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 161 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 164 bp overlap
BHLHE22 2 datasets
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 2 datasets
Motif DE_24h DE_24h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 432 bp overlap
CTCF 2 datasets
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 449 bp overlap
ChIP BLaER1 ENCFF274GAT 295 bp overlap
ChIP BLaER1 ENCFF460KDD 366 bp overlap
DMRTA1 2 datasets
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 2 datasets
Motif DE_24h DE_24h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Dmrt1 2 datasets
Motif DE_24h DE_24h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
E2F6 2 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 216 bp overlap
E2F8 1 dataset
Motif DE_24h DE_24h-E2F8_MA0865.3 9 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 388 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 192 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 171 bp overlap
EZH2 2 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 83 bp overlap
ChIP hESC GSE113817.EZH2.hESC 275 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 357 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 65 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 193 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 609 bp overlap
ChIP DE DE-FOXA2-2 554 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 230 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 480 bp overlap
ChIP DE DE-GATA4-2 611 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 640 bp overlap
ChIP DE DE-GATA6-2 678 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 513 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 566 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 749 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 375 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 343 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 463 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 362 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 378 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 273 bp overlap
HNF4A 3 datasets
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
Motif DE_36h DE_36h-HNF4A_MA0114.5 9 bp overlap
Motif DE_36h DE_36h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif DE_36h DE_36h-HNF4G_MA0484.3 9 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 671 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 288 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 820 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 886 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 664 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 464 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 425 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 539 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 701 bp overlap
ChIP H1 ENCFF078LED 645 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 425 bp overlap
LIN54 2 datasets
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 128 bp overlap
MYF5 2 datasets
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 252 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 209 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 153 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 317 bp overlap
NEUROD1 2 datasets
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
NFATC3 2 datasets
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 405 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
Neurod2 4 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nfat5 2 datasets
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Olig2 2 datasets
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PBX1 2 datasets
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 508 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 202 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 632 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 150 bp overlap
Prdm15 2 datasets
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 256 bp overlap
REL 2 datasets
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
RELA 3 datasets
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 169 bp overlap
RELB 2 datasets
Motif DE_24h DE_24h-RELB_MA1117.2 7 bp overlap
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 177 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 155 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 623 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 615 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 627 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 705 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 807 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 852 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 918 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 220 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 404 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 385 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 292 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 287 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 381 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 262 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 411 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 255 bp overlap
SOX10 2 datasets
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 642 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 275 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 227 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 434 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 349 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 292 bp overlap
TFAP2E 2 datasets
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
TFDP1 1 dataset
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 261 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 244 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 601 bp overlap
TP63 4 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 398 bp overlap
ChIP BxPC-3 GSE115461.TP63.BxPC-3 50 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 73 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 50 bp overlap
Tbx6 6 datasets
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 168 bp overlap
ZBTB18 2 datasets
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZIC1 2 datasets
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 624 bp overlap
ZIC5 2 datasets
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 289 bp overlap
ZNF213 2 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF281 2 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 213 bp overlap
ChIP H9 GSE133630.ZNF398.H9 199 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 537 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 105 bp overlap
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 258 bp overlap
ZNF530 2 datasets
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF701 4 datasets
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap