chr11 : 134,026,706 – 134,027,472
766 bp 88 TFs 3 linked genes
This 766 bp open chromatin element is linked to LINC02730, ENSG00000254648, and LINC02731 and is bound by 88 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02730 at TSS At TSS Proximity
ENSG00000254648 9.6 kb Proximal Proximity
LINC02731 9.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:134,021,706 – 134,032,472
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 189 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 196 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 344 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 381 bp overlap
BRD2 1 dataset
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 93 bp overlap
BRD4 8 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 320 bp overlap
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 89 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 357 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 301 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 202 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 235 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 618 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 275 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 99 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 438 bp overlap
CREB1 3 datasets
ChIP H1 ENCFF955PMP 271 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 293 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 190 bp overlap
CTCF 1 dataset
ChIP neural ENCSR822CEA.CTCF.neural 399 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 323 bp overlap
ChIP BLaER1 ENCFF460KDD 261 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 213 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 450 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 214 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 397 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 371 bp overlap
EZH2 2 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 709 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 245 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 409 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 331 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 327 bp overlap
ChIP DE DE-GATA4-2 61 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 298 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 316 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 442 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 519 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 736 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 330 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 260 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 144 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 314 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 553 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
KDM1A 4 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 295 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 239 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 334 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 384 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 401 bp overlap
MAZ 2 datasets
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 246 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 150 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 141 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 389 bp overlap
ChIP neural cell ENCFF623HQN 566 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 371 bp overlap
MYNN 1 dataset
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 350 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 338 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 350 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 389 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 300 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 205 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 413 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 308 bp overlap
PDX1 5 datasets
ChIP hESC GSE58685.PDX1.hESC 135 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 416 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 478 bp overlap
ChIP islet ERP001456.PDX1.islet 196 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 339 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 192 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 154 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 362 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 260 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 263 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 467 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 348 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 381 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 448 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 491 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 122 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 212 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 267 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RFX1 7 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 398 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 396 bp overlap
ChIP K562 ENCFF421AVO 227 bp overlap
ChIP K562 ENCFF809XVG 428 bp overlap
ChIP MCF-7 ENCFF782EZS 219 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 427 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 325 bp overlap
RFX5 11 datasets
ChIP H1 ENCFF605EGG 131 bp overlap
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 213 bp overlap
ChIP HepG2 ENCFF065UQI 272 bp overlap
ChIP IMR-90 ENCFF886KPO 228 bp overlap
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 247 bp overlap
ChIP K-562 ENCSR000EGO.RFX5.K-562 148 bp overlap
ChIP MCF-7 ENCFF983ILY 288 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 446 bp overlap
ChIP SK-N-SH ENCFF755HLO 236 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 295 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 277 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 219 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 336 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 188 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 476 bp overlap
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 156 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 151 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 291 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 483 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 678 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 629 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 556 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 429 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 553 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 443 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 608 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 300 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 216 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 361 bp overlap
SMARCA4 5 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 333 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 260 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 469 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 622 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 272 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 325 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 440 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 190 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 438 bp overlap
ChIP neural cell ENCFF795YGY 498 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 298 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 377 bp overlap
SOX2 9 datasets
ChIP H9 GSE46837.SOX2.H9 158 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 400 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 389 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 263 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 471 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 234 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 247 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 467 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 298 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 405 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 389 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 290 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 206 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 212 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 225 bp overlap
TP63 3 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 228 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 245 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 185 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 470 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 291 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 397 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 202 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 452 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 284 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 151 bp overlap
ZFHX2 2 datasets
ChIP HEK293 ENCFF167TUA 288 bp overlap
ChIP HEK293 ENCFF167TUA 291 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 251 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 408 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 160 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 119 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 129 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 193 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 291 bp overlap
Huangfu Lab · Publications · Resources · Contact