chr12 : 1,642,503 – 1,643,018
515 bp 36 TFs 3 linked genes
This 515 bp open chromatin element is linked to ADIPOR2, FBXL14, and WNT5B and is bound by 36 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ADIPOR2 48.2 kb Distal Multiome
FBXL14 48.3 kb Distal Multiome
WNT5B 113.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:1,637,503 – 1,648,018
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP GSE110655.AR.LNCaP 195 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 181 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 203 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 152 bp overlap
ASH2L 1 dataset
ChIP VCaP GSE60841.ASH2L.VCaP 328 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 248 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 179 bp overlap
ChIP K-562 ENCSR000EGV.BHLHE40.K-562 218 bp overlap
ChIP K562 ENCFF923NJI 290 bp overlap
BRD4 2 datasets
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 102 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 305 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 225 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 134 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 237 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 243 bp overlap
ESR1 2 datasets
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 59 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 52 bp overlap
FOXA1 1 dataset
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 234 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 383 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 212 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 252 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 509 bp overlap
ChIP G296S GSE85628.GATA4.G296S 83 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 83 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 117 bp overlap
ChIP foregut GSE117136.GATA4.foregut 410 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 515 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 310 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 463 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 499 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 515 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 515 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 515 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 515 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 209 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 449 bp overlap
ChIP foregut GSE117136.GATA6.foregut 502 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 337 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 442 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 459 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 116 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 279 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 129 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 70 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 168 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 168 bp overlap
HOXB13 2 datasets
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 145 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 199 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 405 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 515 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 324 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 418 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 310 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 255 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 368 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 190 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 189 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 434 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 161 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 515 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 515 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 272 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 514 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 429 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 515 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 515 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 262 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 139 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 274 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 255 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 192 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 182 bp overlap