chr12 : 8,589,422 – 8,590,041
619 bp 36 TFs 4 linked genes
This 619 bp open chromatin element is linked to 4 target genes and is bound by 36 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RIMKLB 91.8 kb Distal Multiome
LINC02972 198.4 kb Distal Multiome
LINC00937 199.1 kb Distal Multiome
A2ML1 233.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:8,584,422 – 8,595,041
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 78 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1_UV GSE103125.BCL6.OCI-Ly1_UV 263 bp overlap
Bcl11B 2 datasets
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 225 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 258 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 296 bp overlap
CTCF 4 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 75 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 230 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 249 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 560 bp overlap
FOXE1 2 datasets
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 61 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 619 bp overlap
ChIP DE DE-GATA4-2 619 bp overlap
ChIP foregut GSE117136.GATA4.foregut 480 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 619 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 478 bp overlap
ChIP foregut GSE117136.GATA6.foregut 423 bp overlap
IRF7 1 dataset
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 213 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 259 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 297 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 238 bp overlap
RREB1 2 datasets
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 205 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 361 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 371 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 205 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 265 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
ZBTB40 7 datasets
ChIP HepG2 ENCFF130IRD 432 bp overlap
ChIP HepG2 ENCFF162FPR 109 bp overlap
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 391 bp overlap
ChIP K-562 ENCSR158RYZ.ZBTB40.K-562 194 bp overlap
ChIP K562 ENCFF337GJB 481 bp overlap
ChIP K562 ENCFF521DSV 379 bp overlap
ChIP MCF-7 ENCSR318LVG.ZBTB40.MCF-7 127 bp overlap
ZIM3 2 datasets
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF189 2 datasets
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap