chr12 : 17,579,715 – 17,579,912
197 bp 43 TFs 2 linked genes
This 197 bp open chromatin element is linked to LINC02378 and ENSG00000256389 and is bound by 43 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02378 9.2 kb Proximal Proximity
ENSG00000256389 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:17,574,715 – 17,584,912
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
AR 19 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 148 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 197 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 197 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 145 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 112 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 120 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 197 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 79 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 73 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 149 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 61 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 114 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 97 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 83 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 174 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 180 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 197 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 126 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 71 bp overlap
ARID2 2 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
CHD8 2 datasets
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 159 bp overlap
ChIP T-47D_R5020_5 GSE62428.CHD8.T-47D_R5020_5 136 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 197 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 148 bp overlap
ChIP neural cell ENCFF442QNK 197 bp overlap
ESR1 2 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 147 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 179 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 98 bp overlap
FOXA1 4 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 197 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 89 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 144 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 138 bp overlap
GATA6 1 dataset
ChIP AGS GSE51936.GATA6.AGS 143 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-N 155 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 119 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 141 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
MAX::MYC 1 dataset
Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 60 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 76 bp overlap
NR3C1 7 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 173 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 123 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 76 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 197 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 108 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 160 bp overlap
NR6A1 2 datasets
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PGR 10 datasets
ChIP T-47D GSE31129.PGR.T-47D 197 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 163 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 165 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 197 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 191 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 180 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 197 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 190 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 177 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 184 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 197 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 56 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 71 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 75 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 164 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 150 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 179 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 135 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 136 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 163 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 150 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBTB32 2 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 53 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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