chr12 : 45,725,008 – 45,725,200
192 bp 21 TFs 3 linked genes
This 192 bp open chromatin element is linked to LINC00938, ENSG00000289229, and ARID2 and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00938 2.7 kb Proximal Proximity
ENSG00000289229 3.6 kb Proximal Proximity
ARID2 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:45,720,008 – 45,730,200
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 58 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 135 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 192 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 192 bp overlap
ChIP DE DE-FOXA2-1 192 bp overlap
ChIP DE DE-FOXA2-2 192 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 143 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 128 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 192 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 168 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 123 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 159 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 174 bp overlap
ChIP DE DE-GATA4-1 192 bp overlap
ChIP DE DE-GATA4-2 192 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 192 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 192 bp overlap
ChIP foregut GSE117136.GATA4.foregut 192 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 192 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 136 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 192 bp overlap
ChIP DE DE-GATA6-2 192 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 192 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 192 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 192 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 192 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 192 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 192 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 192 bp overlap
ChIP foregut GSE117136.GATA6.foregut 192 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 192 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 192 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 166 bp overlap
KMT2A 2 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 95 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 143 bp overlap
MEN1 2 datasets
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 85 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 192 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 79 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 186 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 192 bp overlap
RAD21 2 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 104 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 97 bp overlap
SIN3A 1 dataset
ChIP HCT116 ENCFF203YBB 50 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 192 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 192 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 192 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 192 bp overlap