chr12 : 45,986,865 – 45,987,268
403 bp 78 TFs 2 linked genes
This 403 bp open chromatin element is linked to SCAF11 and ENSG00000289046 and is bound by 78 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SCAF11 3.3 kb Proximal Proximity
ENSG00000289046 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:45,981,865 – 45,992,268
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 403 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 361 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 117 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 314 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 221 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 243 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 177 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 147 bp overlap
BRD4 4 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 137 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 323 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 394 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 285 bp overlap
CHD1 1 dataset
ChIP GM12878 ENCFF566UBH 133 bp overlap
CREB1 2 datasets
ChIP GM12878 ENCFF870CVH 139 bp overlap
ChIP GM12878 ENCFF870CVH 351 bp overlap
CREBBP 3 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 206 bp overlap
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 133 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 223 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCFF681AJV 205 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF692SMY 173 bp overlap
EOMES 1 dataset
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 163 bp overlap
ESR1 1 dataset
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 71 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 403 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 370 bp overlap
FOXL2 1 dataset
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 100 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 58 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 59 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 56 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 312 bp overlap
ChIP DE DE-GATA4-2 268 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 305 bp overlap
ChIP DE DE-GATA6-2 317 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 200 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 299 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 93 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 149 bp overlap
ChIP GM12878 ENCFF753XDO 403 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 207 bp overlap
ChIP GM12878 ENCFF238LYK 403 bp overlap
ChIP GM12878 ENCFF918AID 287 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 163 bp overlap
JMJD1C 2 datasets
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 96 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 60 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 304 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 284 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 340 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 226 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 207 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 250 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 142 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 54 bp overlap
MAX 2 datasets
ChIP NB4 ENCFF966MWB 85 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 116 bp overlap
MED1 2 datasets
ChIP G296S GSE85628.MED1.G296S 288 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 288 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 253 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 74 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 403 bp overlap
MXI1 1 dataset
ChIP GM12878 ENCFF666NJR 222 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 86 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 127 bp overlap
MYC 2 datasets
ChIP NB4 ENCFF142PRP 113 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 113 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 230 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 250 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 167 bp overlap
NR5A2 1 dataset
ChIP A549 ENCFF834RVE 403 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 92 bp overlap
PKNOX2 1 dataset
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 4 datasets
ChIP HL-60 ENCFF321XKE 176 bp overlap
ChIP HeLa-S3 ENCFF773DNG 401 bp overlap
ChIP Raji ENCFF613VGX 248 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 175 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 371 bp overlap
ChIP HEK293 ENCFF145WQQ 364 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 385 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 80 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 201 bp overlap
ChIP GM12878 ENCFF217ADF 403 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 235 bp overlap
RUNX1 1 dataset
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 119 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 101 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 119 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 143 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 234 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 258 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 256 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 125 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 117 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 73 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 209 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 337 bp overlap
SPI1 6 datasets
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 140 bp overlap
ChIP GM12878 ENCFF134LCP 108 bp overlap
ChIP GM12891 ENCFF563IUT 82 bp overlap
ChIP HL-60 ENCFF645GBT 88 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 63 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 111 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 214 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 144 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCFF951HUW 131 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 338 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 180 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 121 bp overlap
TEAD1 2 datasets
ChIP MSTO GSE68170.TEAD1.MSTO 227 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 316 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 239 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 186 bp overlap
TGIF1 1 dataset
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_60h DE_60h-TGIF2LX_MA1571.1 12 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF919OMX 107 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 297 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 207 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZSCAN5A 1 dataset
ChIP HepG2 ENCFF633DFI 216 bp overlap