chr12 : 47,286,476 – 47,287,027
551 bp 67 TFs 2 linked genes
This 551 bp open chromatin element is linked to PCED1B and AMIGO2 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCED1B 63.3 kb Distal Multiome
AMIGO2 206.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:47,281,476 – 47,292,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
CTCF 1 dataset
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DMRTC2 1 dataset
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 144 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 90 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 551 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000FAI.FOS.K-562 165 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 490 bp overlap
ChIP DE DE-FOXA2-2 487 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 66 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 418 bp overlap
ChIP DE DE-GATA4-2 447 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 424 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 459 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 447 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 425 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HNF4A 1 dataset
Motif DE_48h DE_48h-HNF4A_MA1494.2 14 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 505 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 213 bp overlap
Lef1 1 dataset
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFYA 5 datasets
ChIP HeLa-S3 ENCFF016YWF 324 bp overlap
ChIP HeLa-S3 ENCFF016YWF 120 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 218 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 255 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 115 bp overlap
NFYB 6 datasets
ChIP GM12878 ENCFF474DNH 270 bp overlap
ChIP HeLa-S3 ENCFF854TNJ 254 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 210 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 270 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 258 bp overlap
ChIP K562 ENCFF709RXX 284 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 219 bp overlap
NR1I2 1 dataset
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
NR4A1 2 datasets
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PKNOX1 3 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 369 bp overlap
ChIP K562 ENCFF236IUS 261 bp overlap
ChIP K562 ENCFF236IUS 173 bp overlap
RARB 1 dataset
Motif DE_48h DE_48h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_48h DE_48h-RARG_MA1553.2 13 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 259 bp overlap
ChIP K562 ENCFF248CGR 286 bp overlap
ChIP K562 ENCFF957ORK 286 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 284 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 440 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 299 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
TCF12 1 dataset
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
TCF7 1 dataset
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF189 1 dataset
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap