chr12 : 49,574,219 – 49,574,522
303 bp 13 TFs 2 linked genes
This 303 bp open chromatin element is linked to PRPF40B and MCRS1 and is bound by 13 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRPF40B 6.0 kb Proximal Proximity
MCRS1 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:49,569,219 – 49,579,522
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 303 bp overlap
ChIP DE DE-FOXA2-2 303 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 303 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 303 bp overlap
ChIP DE DE-GATA6-2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 303 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 223 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCFF683ZWN 289 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 75 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 212 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 188 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 181 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 173 bp overlap