chr12 : 51,386,423 – 51,386,739
316 bp 50 TFs 2 linked genes
This 316 bp open chromatin element is linked to GALNT6 and SLC4A8 and is bound by 50 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GALNT6 4.6 kb Proximal Proximity
SLC4A8 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:51,381,423 – 51,391,739
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
AR 4 datasets
ChIP MCF-7 ERP001226.AR.MCF-7 136 bp overlap
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 281 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 255 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 316 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 316 bp overlap
BRD4 2 datasets
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 237 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 316 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 182 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 247 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 186 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 230 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 316 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 316 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 316 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 316 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 259 bp overlap
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 316 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 231 bp overlap
ESR1 43 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 235 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 316 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 146 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 223 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 152 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 316 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 254 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 127 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 316 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 226 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 291 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 316 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 288 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 313 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 316 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 299 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 227 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 244 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 120 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 136 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 285 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 276 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 154 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 133 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 236 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 316 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 186 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 191 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 181 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 204 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 151 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 219 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 188 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 208 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 315 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 298 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 241 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_1 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_1 199 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 253 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 313 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 316 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 195 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 316 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 213 bp overlap
FOXA1 24 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 316 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 316 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 316 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 154 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 295 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 228 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 205 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 273 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 316 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 281 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 316 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 316 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 316 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 257 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 189 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 236 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 282 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 229 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 316 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 316 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 316 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 264 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 198 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 302 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 316 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 316 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 316 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 316 bp overlap
ChIP DE DE-FOXA2-1 316 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 316 bp overlap
ChIP DE DE-GATA4-2 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 226 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 316 bp overlap
ChIP DE DE-GATA6-2 316 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 145 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 202 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 316 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 316 bp overlap
JUN 2 datasets
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 316 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 316 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 316 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 138 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 316 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 316 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 279 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 281 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 316 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 316 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 275 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 137 bp overlap
PGR 3 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 316 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 316 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 172 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 110 bp overlap
ChIP stomach ENCFF820WZN 147 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 166 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 227 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 215 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 174 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 278 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 316 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 316 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 316 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 226 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 186 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 303 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 290 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 100 bp overlap
STAT3 1 dataset
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 312 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 225 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 305 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 302 bp overlap
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 171 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 156 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCFF772OTG 265 bp overlap
USF1 1 dataset
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 157 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 265 bp overlap
ChIP HEK293 ENCFF336CWQ 316 bp overlap