chr1 : 22,741,075 – 22,741,547
472 bp 33 TFs 3 linked genes
This 472 bp open chromatin element is linked to EPHB2, KDM1A, and ZBTB40 and is bound by 33 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EPHB2 30.5 kb Distal Multiome
KDM1A 278.2 kb Distal Multiome
ZBTB40 289.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:22,736,075 – 22,746,547
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP NGP GSE134626.ARID1A.NGP 236 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 167 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 72 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 264 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 231 bp overlap
CTCF 11 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 314 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 156 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 157 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 230 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 104 bp overlap
ChIP endodermal cell ENCFF471YCZ 340 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 194 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 222 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 182 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 179 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 268 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 145 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 408 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 369 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 232 bp overlap
ChIP DE DE-FOXA2-1 330 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 366 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 472 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 347 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 315 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 472 bp overlap
ChIP DE DE-GATA4-2 472 bp overlap
ChIP foregut GSE117136.GATA4.foregut 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 417 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 472 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 472 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 472 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 472 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 472 bp overlap
ChIP foregut GSE117136.GATA6.foregut 472 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 367 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 334 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 472 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 179 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 379 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 203 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 59 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 160 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 472 bp overlap
NELFE 2 datasets
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 120 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 178 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 159 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 274 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 472 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 369 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 472 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 472 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 202 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 325 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 187 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 189 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 408 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 203 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 288 bp overlap
TAL1 1 dataset
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
ZKSCAN1 2 datasets
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 183 bp overlap
ChIP K562 ENCFF977CBA 221 bp overlap