chr12 : 53,234,337 – 53,234,727
390 bp 47 TFs 2 linked genes
This 390 bp open chromatin element is linked to RARG and ENSG00000283536 and is bound by 47 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RARG 2.1 kb Proximal Proximity
ENSG00000283536 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:53,229,337 – 53,239,727
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 390 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 127 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 73 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 363 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 50 bp overlap
BRD4 7 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 156 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 83 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 313 bp overlap
ChIP hESC GSE33281.BRD4.hESC 74 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 173 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 126 bp overlap
CTCF 1 dataset
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 247 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 59 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 348 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR000BNE.EGR1.K-562 147 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 88 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 140 bp overlap
EZH2 2 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 356 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 292 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 174 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 121 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 350 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 390 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 310 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 165 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 220 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 67 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 351 bp overlap
ChIP HEK293 ENCFF994GSG 154 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 390 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 262 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 127 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 229 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 115 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 367 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 346 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 291 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 169 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 89 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 81 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 61 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 150 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 163 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 172 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 383 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 384 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 61 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 300 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 208 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 388 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 115 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 111 bp overlap
SP1 1 dataset
ChIP HEK293T ERP007114.SP1.HEK293T 262 bp overlap
SP2 4 datasets
ChIP HEK293 ENCFF181QXT 282 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 314 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 238 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 230 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 302 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 352 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 289 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 237 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 72 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 158 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 67 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 167 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 139 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 56 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 187 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 116 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 87 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 304 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 229 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 213 bp overlap