chr12 : 94,731,827 – 94,732,454
627 bp 96 TFs 3 linked genes
This 627 bp open chromatin element is linked to TMCC3, NDUFA12, and CEP83 and is bound by 96 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TMCC3 81.6 kb Distal Multiome
NDUFA12 271.6 kb Distal Multiome
CEP83 272.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:94,726,827 – 94,737,454
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 308 bp overlap
ASCL1 2 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 165 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 143 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BACH2 1 dataset
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 363 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 332 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 404 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 521 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 419 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 507 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 434 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 170 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EHF 2 datasets
ChIP RWPE-1 GSE114241.EHF.RWPE-1 276 bp overlap
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 125 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 163 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 326 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 317 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 321 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 627 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 6 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 360 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 204 bp overlap
ChIP MCF-7 ENCFF282FWZ 177 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 238 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 228 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 162 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 115 bp overlap
ChIP HCT116 ENCFF540ZXN 222 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 542 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
Foxn1 1 dataset
Motif DE_72h DE_72h-Foxn1_MA1684.1 6 bp overlap
GATA1 4 datasets
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 217 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 147 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 165 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 197 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 574 bp overlap
ChIP DE DE-GATA4-2 620 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 346 bp overlap
ChIP foregut GSE117136.GATA4.foregut 561 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 612 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 245 bp overlap
GATA6 17 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 183 bp overlap
ChIP DE DE-GATA6-1 622 bp overlap
ChIP DE DE-GATA6-2 627 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 478 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 495 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 387 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 616 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 535 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 491 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 613 bp overlap
ChIP foregut GSE117136.GATA6.foregut 586 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 457 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 533 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 489 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 276 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HES6 1 dataset
Motif DE_72h DE_72h-HES6_MA1493.1 10 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 320 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 133 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 201 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 117 bp overlap
ChIP keratinocyte_CHD4-KD GSE139685.JUN.keratinocyte_CHD4-KD 127 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 283 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 124 bp overlap
JUND 1 dataset
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 133 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 389 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 494 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 395 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_72h DE_72h-MEIS3_MA0775.2 7 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 65 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MZF1 1 dataset
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 303 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 244 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 339 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 365 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 268 bp overlap
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 349 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 314 bp overlap
Neurod2 2 datasets
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_72h DE_72h-Nr2e3_MA0164.2 6 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 519 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
PLAG1 1 dataset
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
Ptf1A 2 datasets
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 183 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 469 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 288 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 456 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 483 bp overlap
SMAD3 2 datasets
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 186 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 173 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 370 bp overlap
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 107 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 103 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 226 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 140 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
STAT3 6 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 204 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 184 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 146 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 153 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 185 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 123 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_72h DE_72h-TGIF2LX_MA1571.1 12 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZFP36 1 dataset
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 122 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF784 1 dataset
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap