chr12 : 95,549,780 – 95,549,971
191 bp 115 TFs 2 linked genes
This 191 bp open chromatin element is linked to USP44 and PGAM1P5 and is bound by 115 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
USP44 961 bp At TSS Proximity
PGAM1P5 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:95,544,780 – 95,554,971
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 132 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 191 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 191 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 57 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 191 bp overlap
CTCF 1 dataset
ChIP body of pancreas ENCFF438KTE 95 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
ERF 1 dataset
Motif ES_0h ES_0h-ERF_MA0760.2 9 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
ETS1 4 datasets
Motif ES_0h ES_0h-ETS1_MA0098.4 9 bp overlap
ChIP GM23338 ENCFF701IZH 191 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 154 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 125 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif ES_0h ES_0h-ETV2_MA0762.2 9 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
Motif ES_0h ES_0h-FLI1_MA0475.3 9 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 191 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif ES_0h ES_0h-GSX2_MA0893.3 7 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 147 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif ES_0h ES_0h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif ES_0h ES_0h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 191 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif ES_0h ES_0h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif ES_0h ES_0h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 143 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 191 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 191 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 191 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 147 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 191 bp overlap
ChIP H1 ENCFF566JSR 191 bp overlap
ChIP H1 ENCFF833NJP 191 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 144 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 145 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 161 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 191 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 133 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 133 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 142 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 178 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 191 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 191 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 191 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 153 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 149 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 191 bp overlap
ChIP H1 ENCFF478SZO 116 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 191 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 191 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 152 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 191 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 177 bp overlap
ChIP hESC GSE122298.TBP.hESC 182 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 162 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 162 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
TRIM28 2 datasets
ChIP K562 ENCFF671NCI 179 bp overlap
ChIP K562 ENCFF671NCI 191 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 191 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCFF839FUF 184 bp overlap
ChIP WTC11 ENCFF291API 173 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 191 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 191 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap