chr12 : 96,372,974 – 96,373,613
639 bp 45 TFs 2 linked genes
This 639 bp open chromatin element is linked to CDK17 and ELK3 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDK17 27.2 kb Distal Multiome
ELK3 178.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:96,367,974 – 96,378,613
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K562 ENCFF343XWA 85 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 221 bp overlap
CEBPB 4 datasets
ChIP IMR-90 ENCFF468UGY 154 bp overlap
ChIP K562 ENCFF189VBN 212 bp overlap
ChIP K562 ENCFF584CTB 355 bp overlap
ChIP MCF-7 ENCFF772ZTQ 199 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 375 bp overlap
ChIP heart left ventricle ENCFF888ERQ 366 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 183 bp overlap
ChIP BLaER1 ENCFF274GAT 341 bp overlap
ChIP BLaER1 ENCFF364PUR 174 bp overlap
ChIP BLaER1 ENCFF896HSY 264 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 205 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 356 bp overlap
ESR1 2 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 175 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 60 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 371 bp overlap
ChIP DE DE-FOXA2-2 513 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 377 bp overlap
ChIP DE DE-GATA4-2 568 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 494 bp overlap
ChIP DE DE-GATA6-2 639 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 206 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 102 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 210 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 230 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 256 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 258 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 226 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 197 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 419 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 230 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 273 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 141 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 221 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 340 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF284DKY 108 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 444 bp overlap
ChIP K562 ENCFF875HLX 368 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCFF574FZA 83 bp overlap
ZNF24 2 datasets
ChIP GM12878 ENCFF688STO 294 bp overlap
ChIP K562 ENCFF615YYW 313 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 132 bp overlap
ZNF460 1 dataset
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 447 bp overlap
Zfp809 2 datasets
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap