chr12 : 97,560,276 – 97,561,035
759 bp 45 TFs 2 linked genes
This 759 bp open chromatin element is linked to ENSG00000278802 and ENSG00000276398 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000278802 at TSS At TSS Proximity
ENSG00000276398 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:97,555,276 – 97,566,035
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE110655.AR.LNCaP 165 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 289 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 228 bp overlap
BRD4 10 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 387 bp overlap
ChIP COLO-205 GSE73319.BRD4.COLO-205 159 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 139 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 230 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 180 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 212 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 607 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 310 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 174 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 309 bp overlap
CTCF 8 datasets
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 176 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 268 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 340 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 158 bp overlap
ChIP brain ENCFF685VRG 611 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 149 bp overlap
ChIP endodermal cell ENCFF471YCZ 215 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 267 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 228 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 309 bp overlap
ESR1 10 datasets
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 285 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 256 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 260 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 509 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 175 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 263 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 331 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 308 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 362 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 295 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 357 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 393 bp overlap
ChIP neural progenitor cell ENCFF018MKA 560 bp overlap
FOXA1 7 datasets
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 198 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 142 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 407 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 227 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 198 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 429 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 221 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 645 bp overlap
ChIP DE DE-FOXA2-2 563 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 61 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 95 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 79 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 204 bp overlap
GATA1::TAL1 4 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 227 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 601 bp overlap
ChIP DE DE-GATA4-2 609 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 443 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 493 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 614 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 505 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 538 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 386 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 554 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 652 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 341 bp overlap
HAND2 4 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HOXB4 3 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 3 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 3 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 281 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 235 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 162 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 283 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 220 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 313 bp overlap
RARA::RXRA 3 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 186 bp overlap
RUNX3 4 datasets
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Motif DE_24h DE_24h-RUNX3_MA0684.3 8 bp overlap
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
SATB1 3 datasets
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
Motif DE_48h DE_48h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 509 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 397 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 303 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 271 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 346 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 387 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 168 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 387 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 424 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 284 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 329 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 759 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 361 bp overlap
ChIP neural cell ENCFF795YGY 519 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 352 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 190 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 144 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 167 bp overlap
ZBTB32 1 dataset
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF75A 4 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
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