chr12 : 100,578,596 – 100,578,756
160 bp 3 TFs 2 linked genes
This 160 bp open chromatin element is linked to PIGAP1 and GAS2L3 and is bound by DUX4, SMAD2-3, and SMAD2_3.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PIGAP1 at TSS At TSS Proximity
GAS2L3 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:100,573,596 – 100,583,756
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
3 transcription factors
Source
Cell type
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 135 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 160 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 160 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 160 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 157 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 160 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 160 bp overlap