chr12 : 111,339,291 – 111,339,878
587 bp 62 TFs 2 linked genes
This 587 bp open chromatin element is linked to RNA5SP373 and ATXN2 and is bound by 62 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNA5SP373 at TSS At TSS Proximity
ATXN2 259.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:111,334,291 – 111,344,878
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1 GSE85558.AR.22Rv1 142 bp overlap
Bach1::Mafk 2 datasets
Motif DE_36h DE_36h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 175 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_5 GSE62428.CHD8.T-47D_R5020_5 261 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 214 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 179 bp overlap
E2F7 2 datasets
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
Motif DE_72h DE_72h-E2F7_MA0758.1 14 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
ESR1 15 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 242 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 347 bp overlap
ChIP MCF-7_E2 GSE73956.ESR1.MCF-7_E2 238 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 145 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 256 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 157 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 207 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 167 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 213 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 250 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 207 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 268 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 216 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 250 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 256 bp overlap
ESR2 1 dataset
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 155 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 160 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 325 bp overlap
ChIP DE DE-FOXA2-1 587 bp overlap
ChIP DE DE-FOXA2-2 587 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 189 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 198 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 149 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 139 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA2 7 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 172 bp overlap
GATA4 14 datasets
ChIP A-549 GSE85002.GATA4.A-549 350 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 251 bp overlap
ChIP DE DE-GATA4-1 587 bp overlap
ChIP DE DE-GATA4-2 587 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 364 bp overlap
ChIP foregut GSE117136.GATA4.foregut 587 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 421 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 404 bp overlap
GATA5 3 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 25 datasets
ChIP AGS GSE51705.GATA6.AGS 464 bp overlap
ChIP AGS GSE51936.GATA6.AGS 171 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 122 bp overlap
ChIP DE DE-GATA6-1 587 bp overlap
ChIP DE DE-GATA6-2 587 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 511 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 560 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 565 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 587 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 582 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 565 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 265 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 484 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 587 bp overlap
ChIP foregut GSE117136.GATA6.foregut 587 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 520 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 259 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 386 bp overlap
Gata3 6 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 263 bp overlap
HNF4A 9 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 312 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 123 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 362 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 266 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 121 bp overlap
ChIP HepG2 ENCFF146SSF 361 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 409 bp overlap
ChIP liver ENCFF354NRH 371 bp overlap
ChIP liver ENCFF449HPV 418 bp overlap
HNF4G 1 dataset
ChIP liver ENCSR297GII.HNF4G.liver 194 bp overlap
Hic1 6 datasets
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_72h DE_72h-Hic1_MA0739.2 8 bp overlap
Motif DE_72h DE_72h-Hic1_MA0739.2 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 486 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 247 bp overlap
MAFK 2 datasets
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 226 bp overlap
Mafg 2 datasets
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
Mecom 3 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 284 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 254 bp overlap
NR5A1 3 datasets
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 138 bp overlap
OSR2 2 datasets
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 201 bp overlap
POU5F1 3 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 487 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 407 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 258 bp overlap
PRDM9 2 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RELA 6 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 185 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 328 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 307 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 281 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 587 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 564 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 461 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 558 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 570 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 587 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 389 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 132 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 437 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 254 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 587 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 587 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 342 bp overlap
Sox6 3 datasets
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 190 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 149 bp overlap
THRB 3 datasets
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
TRPS1 6 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 213 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF677 3 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF76 2 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap