chr12 : 119,089,271 – 119,089,712
441 bp 81 TFs 2 linked genes
This 441 bp open chromatin element is linked to SRRM4 and CCDC60 and is bound by 81 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SRRM4 107.8 kb Distal Multiome
CCDC60 245.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:119,084,271 – 119,094,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 88 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 386 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 441 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 441 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 403 bp overlap
BCL11A 4 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 114 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 204 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 376 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 296 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 358 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 397 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 441 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 327 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 205 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 67 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 313 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 350 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 177 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 364 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 350 bp overlap
CREB1 7 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 422 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 72 bp overlap
ChIP MCF-7 ENCFF341ZEM 83 bp overlap
ChIP MCF-7 ENCFF867SAS 79 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 142 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 111 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 313 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 219 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 441 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF460KDD 337 bp overlap
ChIP BLaER1 ENCFF896HSY 295 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 261 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 281 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 314 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 156 bp overlap
ChIP hESC GSE17917.EP300.hESC 267 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 202 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 388 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 51 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 119 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 441 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 218 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 441 bp overlap
ChIP DE DE-GATA4-2 441 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 388 bp overlap
ChIP DE DE-GATA6-2 441 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 364 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 393 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 441 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 218 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 242 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 322 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 353 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 427 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 422 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 342 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 267 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 220 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 92 bp overlap
ChIP H1 ENCFF914VQY 330 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 355 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 305 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 366 bp overlap
MXD4 1 dataset
ChIP WTC11 ENCFF044PLT 261 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 265 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 265 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 347 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 441 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 441 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 415 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 441 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 441 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 354 bp overlap
ChIP hESC GSE18292.NANOG.hESC 316 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 268 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 378 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 281 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 361 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 264 bp overlap
NR3C1 2 datasets
ChIP WTC11 ENCFF422OEM 441 bp overlap
ChIP WTC11 ENCFF422OEM 283 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 387 bp overlap
POU5F1 11 datasets
ChIP BG03 GSE21614.POU5F1.BG03 203 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 441 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 441 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 209 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 228 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 199 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 441 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 331 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 260 bp overlap
Pgr 1 dataset
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 316 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 393 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 259 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 126 bp overlap
ChIP K562 ENCFF248CGR 251 bp overlap
ChIP K562 ENCFF957ORK 251 bp overlap
REST 1 dataset
ChIP H1 ENCFF429RUE 193 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 415 bp overlap
SMAD2 2 datasets
ChIP hESC GSE29422.SMAD2.hESC 201 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 431 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 396 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 430 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 259 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 441 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 419 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 362 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 194 bp overlap
ChIP WTC11 ENCFF815YYQ 228 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 341 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 263 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 168 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 415 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 266 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 326 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 304 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 384 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 388 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 441 bp overlap
SOX2 6 datasets
ChIP H9 GSE46837.SOX2.H9 416 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 441 bp overlap
ChIP hESC GSE69479.SOX2.hESC 385 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 389 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 374 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 210 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 428 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 261 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 441 bp overlap
ChIP WTC11 ENCFF688PEU 396 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 138 bp overlap
SRF 1 dataset
ChIP H1 ENCFF036PEF 225 bp overlap
Stat4 1 dataset
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 270 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 244 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 178 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 139 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 338 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 409 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 335 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 251 bp overlap
TP53 1 dataset
ChIP H9 GSE39912.TP53.H9 213 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 307 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 346 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 366 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 301 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 125 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 441 bp overlap