chr13 : 28,438,646 – 28,439,159
513 bp 55 TFs 3 linked genes
This 513 bp open chromatin element is linked to FLT1, POMP, and PAN3 and is bound by 55 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FLT1 56.2 kb Distal Multiome
POMP 220.2 kb Distal Multiome
PAN3 300.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:28,433,646 – 28,444,159
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 513 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 475 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 513 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 153 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 144 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 300 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 436 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 495 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 327 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 413 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 313 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 212 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 266 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 177 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 159 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 432 bp overlap
CTCF 7 datasets
ChIP GM23338 ENCFF772DML 164 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 203 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 227 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 423 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 163 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 171 bp overlap
CTNNB1 1 dataset
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 293 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 158 bp overlap
ChIP hESC GSE17917.EP300.hESC 275 bp overlap
ESR1 3 datasets
ChIP T-47D GSE148277.ESR1.T-47D 111 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 118 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 118 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 356 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 383 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 277 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 133 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 513 bp overlap
ChIP H1 ENCFF353UJQ 377 bp overlap
ChIP H1 ENCFF939VKA 224 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 186 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 466 bp overlap
JUN 6 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 463 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 513 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 444 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 513 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 360 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 460 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 513 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 267 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 257 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 363 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 513 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 513 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 164 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 513 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 513 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 491 bp overlap
ChIP hESC GSE18292.NANOG.hESC 266 bp overlap
ChIP hESC GSE20650.NANOG.hESC 206 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 211 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 169 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 309 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 183 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 287 bp overlap
ChIP GM23338 ENCFF333SNB 257 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 513 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 507 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 513 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 384 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 410 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 353 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 334 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 513 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 294 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 485 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 513 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 513 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 513 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 429 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 473 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 513 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 411 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 513 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 513 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 480 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 410 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 351 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 234 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 513 bp overlap
SMAD3 7 datasets
ChIP BG03 GSE21614.SMAD3.BG03 311 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 426 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 391 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 375 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 302 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 193 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 222 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 124 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 513 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 513 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 299 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 491 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 513 bp overlap
SOX2 4 datasets
ChIP RENVM GSE49404.SOX2.RENVM 142 bp overlap
ChIP hESC GSE69479.SOX2.hESC 229 bp overlap
ChIP hESC GSE18292.SOX2.hESC 108 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 409 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 219 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 163 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 332 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 513 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 319 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 235 bp overlap
TP53 4 datasets
ChIP H9 GSE39912.TP53.H9 80 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 421 bp overlap
ChIP WTC11 ENCFF359JCU 363 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 506 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 81 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 316 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 126 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 455 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 248 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 513 bp overlap