chr13 : 30,031,400 – 30,031,991
591 bp 77 TFs 2 linked genes
This 591 bp open chromatin element is linked to UBL3 and KATNAL1 and is bound by 77 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
UBL3 181.0 kb Distal Multiome
KATNAL1 275.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:30,026,400 – 30,036,991
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_36h DE_36h-Atoh1_MA1467.3 7 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 419 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 415 bp overlap
ChIP DE DE-FOXA2-2 319 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 578 bp overlap
ChIP DE DE-GATA4-2 538 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 448 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 449 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 547 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 484 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 518 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 591 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 582 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 519 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_36h DE_36h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_36h DE_36h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_36h DE_36h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_36h DE_36h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_36h DE_36h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 255 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 283 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 133 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_36h DE_36h-MEIS2_MA0774.1 8 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MSC 1 dataset
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
PKNOX2 1 dataset
Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
SCRT1 1 dataset
Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 187 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 565 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 388 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 301 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 482 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 575 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 589 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 210 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 213 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 270 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 359 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 532 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 218 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 307 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 152 bp overlap
TBR1 2 datasets
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TGIF1 1 dataset
Motif DE_36h DE_36h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_36h DE_36h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_36h DE_36h-TGIF2LY_MA1572.1 12 bp overlap
Tbx6 2 datasets
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 143 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 174 bp overlap