chr1 : 220,274,229 – 220,274,377
148 bp 83 TFs 2 linked genes
This 148 bp open chromatin element is linked to RAB3GAP2 and AURKAP1 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAB3GAP2 1.8 kb Proximal Proximity
AURKAP1 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:220,269,229 – 220,279,377
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 133 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 148 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 82 bp overlap
ChIP K562 ENCFF308SKS 72 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BRD2 1 dataset
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 111 bp overlap
BRD3 1 dataset
ChIP THP-1_DMSO GSE138084.BRD3.THP-1_DMSO 91 bp overlap
BRD4 7 datasets
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 148 bp overlap
ChIP K562 ENCFF092PWQ 148 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 105 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 87 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 136 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 148 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 57 bp overlap
CEBPA 3 datasets
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 77 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 50 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 106 bp overlap
CEBPB 4 datasets
ChIP HCT116 ENCFF097OLY 63 bp overlap
ChIP K562 ENCFF584CTB 80 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 80 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 61 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 148 bp overlap
ChIP K562 ENCFF956TPS 71 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 148 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 148 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 69 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 73 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 148 bp overlap
ChIP K562 ENCFF688PUB 148 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 73 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 89 bp overlap
FOXO4 1 dataset
ChIP K562 ENCFF296NLF 99 bp overlap
HBP1 1 dataset
ChIP K562 ENCFF882TEV 64 bp overlap
HNF4A 2 datasets
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 148 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 55 bp overlap
KMT2B 1 dataset
ChIP AML GSE112074.KMT2B.AML 148 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 122 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 148 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 53 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 148 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 148 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 138 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 148 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 148 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 148 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 148 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap
ChIP hESC GSE18292.NANOG.hESC 136 bp overlap
NFIX 1 dataset
ChIP K562 ENCFF382SJS 58 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 148 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 148 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
POLR2A 1 dataset
ChIP breast epithelium ENCFF045XXN 148 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 148 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 112 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 80 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 83 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 148 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 89 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 148 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 148 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 148 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 148 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 148 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 134 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 148 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 125 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 148 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 148 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 148 bp overlap
ChIP hESC GSE69479.SOX2.hESC 148 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 148 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SPI1 1 dataset
ChIP U-937 GSE128834.SPI1.U-937 73 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
Tcf21 1 dataset
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 114 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 69 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 113 bp overlap
ZNF175 2 datasets
ChIP K-562 ENCSR011PEI.ZNF175.K-562 129 bp overlap
ChIP K562 ENCFF497AEJ 148 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR117WTM.ZNF24.K-562 148 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 79 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 52 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 148 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 134 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 148 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 104 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 148 bp overlap
ZNF79 1 dataset
ChIP K562 ENCFF558WWN 74 bp overlap