chr13 : 93,228,961 – 93,229,634
673 bp 48 TFs 2 linked genes
This 673 bp open chromatin element is linked to ENSG00000278177 and GPC6 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000278177 1.6 kb Proximal Proximity
GPC6 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:93,223,961 – 93,234,634
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP K-562 GSE120104.AGO1.K-562 66 bp overlap
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 228 bp overlap
BRD2 2 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 211 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 175 bp overlap
BRD4 9 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 533 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 244 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 273 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 122 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 170 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 248 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 248 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 142 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 181 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 673 bp overlap
CLOCK 1 dataset
ChIP MCF-7 ENCSR699YFX.CLOCK.MCF-7 118 bp overlap
E2F1 1 dataset
ChIP K562 ENCFF749FMR 120 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 169 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 394 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 256 bp overlap
ChIP DE DE-FOXA2-1 673 bp overlap
ChIP DE DE-FOXA2-2 562 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 646 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 433 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 418 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 225 bp overlap
GATA2 8 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 364 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 276 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 226 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 168 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 212 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 473 bp overlap
GATA3 16 datasets
ChIP BE2C GSE65664.GATA3.BE2C 382 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 284 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 433 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 187 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 121 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 218 bp overlap
ChIP NGP GSE65664.GATA3.NGP 165 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 540 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 227 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 400 bp overlap
ChIP SK-N-SH ENCFF040SSB 93 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 517 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 568 bp overlap
ChIP T47D-A1-2_Dex GSE112491.GATA3.T47D-A1-2_Dex 267 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 206 bp overlap
GATA3_Cter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Cter.T-47D_CR3flp 251 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 392 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 506 bp overlap
GATA4 13 datasets
ChIP DE DE-GATA4-1 645 bp overlap
ChIP DE DE-GATA4-2 673 bp overlap
ChIP G296S GSE85628.GATA4.G296S 580 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 580 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 362 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 366 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 193 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 230 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 561 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 516 bp overlap
ChIP foregut GSE117136.GATA4.foregut 486 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 524 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 543 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 199 bp overlap
ChIP DE DE-GATA6-1 673 bp overlap
ChIP DE DE-GATA6-2 673 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 518 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 422 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 673 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 528 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 190 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 565 bp overlap
ChIP foregut GSE117136.GATA6.foregut 370 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 326 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 117 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 199 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 53 bp overlap
KMT2A 4 datasets
ChIP MCF-7_C-term_DMSO GSE90762.KMT2A.MCF-7_C-term_DMSO 108 bp overlap
ChIP MCF-7_C-term_TTP22 GSE90762.KMT2A.MCF-7_C-term_TTP22 235 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 194 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 91 bp overlap
MCRS1 2 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 311 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 311 bp overlap
MEN1 1 dataset
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 606 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 258 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 268 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 385 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 359 bp overlap
PRDM6 1 dataset
ChIP HEK293 GSE76494.PRDM6.HEK293 95 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 349 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 185 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 505 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 389 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 544 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 254 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 440 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 327 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 252 bp overlap
SMARCA4 2 datasets
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 315 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 166 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 437 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 90 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 202 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 238 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 251 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 197 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 249 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 133 bp overlap
U2AF1 2 datasets
ChIP K-562 GSE120104.U2AF1.K-562 456 bp overlap
ChIP K-562 ENCSR690GUG.U2AF1.K-562 319 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 201 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 363 bp overlap
ZNF512 1 dataset
ChIP K-562 ENCSR591CCL.ZNF512.K-562 287 bp overlap
ZNF778 1 dataset
ChIP HepG2 ENCFF967DPC 54 bp overlap
ZSCAN5A 1 dataset
ChIP HEK293 ENCFF610EME 361 bp overlap
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