chr13 : 98,163,973 – 98,164,873
900 bp 68 TFs 2 linked genes
This 900 bp open chromatin element is linked to FARP1 and IPO5 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FARP1 21.1 kb Distal Multiome
IPO5 187.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:98,158,973 – 98,169,873
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 238 bp overlap
ARID4A 3 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF142DIE 668 bp overlap
ChIP HepG2 ENCFF142DIE 745 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 557 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 347 bp overlap
BAZ2A 1 dataset
ChIP HepG2 ENCFF797RVO 337 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 377 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 114 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 257 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 274 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 381 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 404 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 138 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 867 bp overlap
ChIP DE DE-FOXA2-2 840 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 405 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 123 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 120 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 186 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 569 bp overlap
ChIP DE DE-GATA4-2 864 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 808 bp overlap
ChIP DE DE-GATA6-2 814 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 448 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 365 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 131 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 137 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 136 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 153 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 130 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 150 bp overlap
MAX 4 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 265 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 187 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 328 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 273 bp overlap
MED1 2 datasets
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF495TSS 461 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 237 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 229 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 196 bp overlap
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 226 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 219 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 240 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 338 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 411 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 402 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 290 bp overlap
ChIP hESC GSE18292.NANOG.hESC 209 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 637 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 255 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 399 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 242 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 285 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 262 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 229 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 261 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 243 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 205 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 264 bp overlap
PGR 1 dataset
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 343 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 311 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 316 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 183 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF292RVQ 168 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 330 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 249 bp overlap
SIN3A 3 datasets
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 207 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 125 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 140 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 740 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 634 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 577 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 520 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 149 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 158 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 257 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 473 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 469 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 294 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 258 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 225 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF006QNB 431 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 289 bp overlap
ChIP HepG2 ENCFF030SRU 371 bp overlap
ChIP HepG2 ENCFF932XOY 182 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 411 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 164 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 170 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 137 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 230 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 516 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 187 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 128 bp overlap