chr1 : 223,839,235 – 223,839,449
214 bp 37 TFs 2 linked genes
This 214 bp open chromatin element is linked to TP53BP2 and ENSG00000288999 and is bound by 37 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TP53BP2 6.3 kb Proximal Proximity
ENSG00000288999 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:223,834,235 – 223,844,449
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP K562 ENCFF728CDS 214 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 211 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 214 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 214 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 130 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 214 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 214 bp overlap
ChIP DE DE-FOXA2-2 214 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 182 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 52 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 214 bp overlap
ChIP DE DE-GATA4-2 214 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 198 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 214 bp overlap
ChIP DE DE-GATA6-2 214 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 214 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 214 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 214 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 214 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 214 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 214 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 214 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 168 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 214 bp overlap
ChIP K562 ENCFF317JJX 214 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 174 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 194 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 59 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 85 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 139 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 214 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 168 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 120 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 214 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 214 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 199 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 108 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 214 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 206 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 166 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 214 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 214 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 197 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 214 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 214 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 214 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 214 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 214 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 202 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 142 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 173 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 86 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 214 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 214 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 214 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 214 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 214 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 214 bp overlap
ChIP HEK293 ENCFF336CWQ 196 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 140 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 214 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 214 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 104 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 164 bp overlap