chr1 : 225,940,953 – 225,941,412
459 bp 65 TFs 2 linked genes
This 459 bp open chromatin element is linked to LEFTY2 and ENSG00000248322 and is bound by 65 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LEFTY2 at TSS At TSS Proximity
ENSG00000248322 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:225,935,953 – 225,946,412
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 226 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 246 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 142 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 68 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 252 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 255 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 158 bp overlap
EGR1 5 datasets
ChIP A-375 GSE116190.EGR1.A-375 77 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 78 bp overlap
ChIP HepG2 ENCFF674RQO 243 bp overlap
ChIP Ishikawa ENCFF550FKT 162 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 88 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 210 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 237 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 233 bp overlap
ESR1 14 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 241 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 459 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 459 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 312 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 79 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 255 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 289 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 181 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 214 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 204 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 226 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 286 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 224 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 325 bp overlap
FIP1L1 1 dataset
ChIP K-562 GSE120104.FIP1L1.K-562 186 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 160 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 192 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 459 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 162 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 62 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 306 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 316 bp overlap
ChIP HepG2 ENCFF671UYF 380 bp overlap
ChIP HepG2 ENCFF684GAM 380 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 175 bp overlap
HOXA3 2 datasets
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 89 bp overlap
ChIP HepG2 ENCFF374TCI 190 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 52 bp overlap
MAX 3 datasets
ChIP HepG2 ENCFF507HCX 194 bp overlap
ChIP HepG2 ENCFF507HCX 395 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 91 bp overlap
MED1 5 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 459 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 92 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 279 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 235 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 344 bp overlap
MTA1 1 dataset
ChIP HepG2 ENCFF038CCB 329 bp overlap
MYC 2 datasets
ChIP HepG2 ENCFF575FXK 305 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 163 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 291 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 173 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCFF029AAD 202 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 285 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 261 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 93 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 298 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 229 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 290 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 225 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 122 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 333 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 204 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 260 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 223 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 302 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 459 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 384 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 212 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 194 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 78 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 114 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 84 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 406 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 109 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 127 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 199 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 102 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 98 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 255 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 354 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 263 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 272 bp overlap
TAF1 2 datasets
ChIP Ishikawa ENCFF271ZVL 396 bp overlap
ChIP Ishikawa ENCFF271ZVL 244 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 56 bp overlap
ChIP K-562 ENCSR047LSJ.TAF15.K-562 248 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 147 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 263 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 459 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 357 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 270 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 166 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 201 bp overlap
USF1 5 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 72 bp overlap
ChIP HepG2 ENCFF201JKA 83 bp overlap
ChIP HepG2 ENCFF807KYJ 107 bp overlap
ChIP Ishikawa ENCFF728IEG 159 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 156 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 143 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 245 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 180 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 76 bp overlap
ZBTB7A 3 datasets
ChIP Ishikawa ENCFF191NFH 77 bp overlap
ChIP Ishikawa ENCFF191NFH 279 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 232 bp overlap
ZFX 3 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 459 bp overlap
ChIP HepG2 ENCFF016NZF 242 bp overlap
ChIP HepG2 ENCFF016NZF 459 bp overlap
ZFY 2 datasets
ChIP HepG2 ENCFF106ELT 306 bp overlap
ChIP HepG2 ENCFF106ELT 459 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 300 bp overlap
ZNF697 1 dataset
ChIP HepG2 ENCFF153LJW 226 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 459 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 244 bp overlap
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