chr14 : 88,364,579 – 88,365,430
851 bp 118 TFs 3 linked genes
This 851 bp open chromatin element is linked to SPATA7, PTPN21, and ZC3H14 and is bound by 118 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SPATA7 20.8 kb Distal Multiome
PTPN21 190.0 kb Distal Multiome
ZC3H14 198.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:88,359,579 – 88,370,430
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
118 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif ES_0h ES_0h-ARNT2_MA1464.2 8 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 302 bp overlap
ChIP H1 ENCFF399KAM 713 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 818 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 215 bp overlap
Arid3b 1 dataset
Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap
Arnt 1 dataset
Motif ES_0h ES_0h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif ES_0h ES_0h-Arntl_MA0603.2 8 bp overlap
BACH2 1 dataset
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 247 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP H1 ENCFF126NLU 528 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 209 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 355 bp overlap
CTCF 1 dataset
ChIP C4-2B ENCFF821XVN 227 bp overlap
DMRTC2 1 dataset
Motif ES_0h ES_0h-DMRTC2_MA1479.2 11 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 150 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 234 bp overlap
FLI1::FOXI1 2 datasets
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HES1 1 dataset
Motif ES_0h ES_0h-HES1_MA1099.3 8 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 330 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF17 2 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MAX 3 datasets
Motif ES_0h ES_0h-MAX_MA0058.4 6 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 198 bp overlap
ChIP WTC11 ENCFF223QFY 402 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MEIS1 4 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 8 datasets
ChIP 501-mel GSE137522.MITF.501-mel 512 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 226 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 504 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 502 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 363 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 410 bp overlap
ChIP K562 ENCFF731XJJ 210 bp overlap
MLX 1 dataset
Motif ES_0h ES_0h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif ES_0h ES_0h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif ES_0h ES_0h-MNT_MA0825.2 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 307 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 497 bp overlap
Mlxip 1 dataset
Motif ES_0h ES_0h-Mlxip_MA0622.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 133 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 814 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 542 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 640 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 561 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 604 bp overlap
ChIP hESC GSE20650.NANOG.hESC 175 bp overlap
ChIP hESC GSE18292.NANOG.hESC 104 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2C2 1 dataset
ChIP WTC11 ENCFF896ODS 371 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 266 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 1 dataset
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 230 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 198 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 760 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 624 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 196 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 246 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 215 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 127 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 492 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 680 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 243 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 215 bp overlap
PRDM1 1 dataset
ChIP HeLa-S3 ENCFF893HDJ 265 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD51 7 datasets
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 384 bp overlap
ChIP Hep-G2 ENCSR081WLS.RAD51.Hep-G2 317 bp overlap
ChIP HepG2 ENCFF188FEZ 365 bp overlap
ChIP K-562 ENCSR524BUE.RAD51.K-562 260 bp overlap
ChIP K562 ENCFF133ELP 405 bp overlap
ChIP MCF-7 ENCFF128SEB 397 bp overlap
ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 294 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 601 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 157 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RREB1 2 datasets
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Motif ES_0h ES_0h-RREB1_MA0073.2 19 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 254 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 184 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 227 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 248 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 274 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 413 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 468 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 319 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 336 bp overlap
ChIP hESC GSE18292.SOX2.hESC 100 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
SP1 4 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 216 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TFE3 2 datasets
Motif ES_0h ES_0h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 100 bp overlap
TFEB 1 dataset
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif ES_0h ES_0h-TFEC_MA0871.3 8 bp overlap
TOE1 2 datasets
ChIP HepG2 ENCFF776YJH 305 bp overlap
ChIP MCF-7 ENCFF544WQF 227 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 537 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 175 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
USF1 8 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 210 bp overlap
ChIP H1 ENCFF090WVU 119 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 167 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 353 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 5 datasets
Motif ES_0h ES_0h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 283 bp overlap
ChIP IMR-90 ENCFF438KUN 257 bp overlap
ChIP K562 ENCFF306QPU 537 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 522 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 254 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap