chr14 : 90,605,311 – 90,605,782
471 bp 80 TFs 3 linked genes
This 471 bp open chromatin element is linked to CALM1, TTC7B, and NRDE2 and is bound by 80 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CALM1 208.6 kb Distal Multiome
TTC7B 210.9 kb Distal Multiome
NRDE2 273.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:90,600,311 – 90,610,782
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 471 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 409 bp overlap
ATF2 3 datasets
ChIP HepG2 ENCFF955VER 96 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 73 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 329 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 175 bp overlap
BRD4 1 dataset
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 372 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 364 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 209 bp overlap
ChIP H1 ENCFF955PMP 127 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 252 bp overlap
CTCFL 3 datasets
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Motif DE_60h DE_60h-CTCFL_MA1102.3 8 bp overlap
Motif DE_72h DE_72h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 297 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 294 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 221 bp overlap
FOXA1 4 datasets
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 102 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 199 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 318 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 284 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 108 bp overlap
ChIP DE DE-FOXA2-1 471 bp overlap
ChIP DE DE-FOXA2-2 471 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 308 bp overlap
FOXA3 1 dataset
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_72h DE_72h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 199 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
Foxf1 1 dataset
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 455 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 275 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 287 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 452 bp overlap
ChIP DE DE-GATA6-2 471 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 471 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 471 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 471 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 469 bp overlap
ChIP foregut GSE117136.GATA6.foregut 328 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 373 bp overlap
GFI1B 2 datasets
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 237 bp overlap
GLIS2 3 datasets
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
Motif DE_60h DE_60h-GLIS2_MA0736.1 14 bp overlap
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
Gli1 3 datasets
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 3 datasets
Motif DE_36h DE_36h-Gli2_MA0734.4 9 bp overlap
Motif DE_60h DE_60h-Gli2_MA0734.4 9 bp overlap
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 471 bp overlap
IRF4 1 dataset
Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 300 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 307 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 344 bp overlap
JUN::JUNB 3 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 308 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 213 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 421 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 392 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 471 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 274 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 306 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 307 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 56 bp overlap
Plagl1 3 datasets
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RAD21 1 dataset
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 171 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 471 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 196 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 382 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 211 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 388 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 340 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 407 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 344 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 373 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 240 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 65 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 253 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 291 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 301 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 466 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 381 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 333 bp overlap
SOX10 3 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 367 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 315 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 153 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 110 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 288 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 250 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 191 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 220 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 147 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 307 bp overlap
ZIC1 3 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 3 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF24 3 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF354C 1 dataset
ChIP K562 ENCFF371JMA 64 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 84 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF816 2 datasets
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap
Motif DE_72h DE_72h-ZNF816_MA1719.2 15 bp overlap