chr1 : 230,576,014 – 230,576,719
705 bp 84 TFs 2 linked genes
This 705 bp open chromatin element is linked to COG2 and C1orf198 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
COG2 66.2 kb Distal Multiome
C1orf198 292.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,571,014 – 230,581,719
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 10 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 337 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 183 bp overlap
ChIP LNCaP_Bag-1L_WT GSE89938.AR.LNCaP_Bag-1L_WT 179 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 197 bp overlap
ChIP VCaP GSE148358.AR.VCaP 216 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 156 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 211 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 165 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 217 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 307 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 242 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 321 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BCL11A 8 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 203 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 69 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 134 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 63 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 67 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 69 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 172 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 161 bp overlap
BRD4 1 dataset
ChIP Mutu-1_JQ1 GSE84213.BRD4.Mutu-1_JQ1 159 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 188 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 264 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 633 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 235 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 252 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 373 bp overlap
EN2 1 dataset
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
ERG 2 datasets
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 164 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 287 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 247 bp overlap
FOXA1 6 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 224 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 249 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 210 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 167 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 197 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 120 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 191 bp overlap
ChIP DE DE-FOXA2-1 705 bp overlap
ChIP DE DE-FOXA2-2 705 bp overlap
GATA1 13 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 308 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 399 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 348 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 237 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 214 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 198 bp overlap
ChIP erythroblast ENCFF125LDD 395 bp overlap
ChIP erythroblast ENCFF867JAR 540 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 661 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 402 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 286 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 422 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 290 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 196 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 196 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 202 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 473 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 326 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 351 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 232 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 705 bp overlap
ChIP DE DE-GATA4-2 705 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 242 bp overlap
ChIP foregut GSE117136.GATA4.foregut 383 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 487 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 454 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 268 bp overlap
ChIP DE DE-GATA6-1 705 bp overlap
ChIP DE DE-GATA6-2 705 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 447 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 565 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 568 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 215 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 214 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 362 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 504 bp overlap
ChIP foregut GSE117136.GATA6.foregut 358 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 496 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 375 bp overlap
GBX1 1 dataset
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 174 bp overlap
ChIP K562 ENCFF055GAZ 188 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 167 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 2 datasets
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 229 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 281 bp overlap
HOXC12 1 dataset
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 267 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 379 bp overlap
LBX1 1 dataset
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 220 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
MAFF 1 dataset
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP VCaP_Veh GSE125245.MED1.VCaP_Veh 243 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 193 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 225 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 345 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 205 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 4 datasets
ChIP erythroblast ENCFF498VMR 705 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 208 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
PRRX2 1 dataset
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 413 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 212 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 372 bp overlap
SMAD1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.SMAD1.CD34_ERYTH_BMP 186 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 609 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 224 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 186 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 626 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 705 bp overlap
SOX4 1 dataset
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 259 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 229 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 295 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 232 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 374 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 209 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 348 bp overlap
ZNF449 1 dataset
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCFF468FCG 50 bp overlap