chr1 : 230,984,377 – 230,984,616
239 bp 63 TFs 2 linked genes
This 239 bp open chromatin element is linked to ARV1 and TTC13 and is bound by 63 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARV1 5.3 kb Proximal Proximity
TTC13 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,979,377 – 230,989,616
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 99 bp overlap
BCL6 1 dataset
ChIP K562 ENCFF501MST 142 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 88 bp overlap
BRD9 2 datasets
ChIP K-562 ENCSR177XCS.BRD9.K-562 110 bp overlap
ChIP K562 ENCFF480JXZ 182 bp overlap
CDC5L 2 datasets
ChIP K-562 ENCSR121PFY.CDC5L.K-562 159 bp overlap
ChIP K562 ENCFF644OMA 206 bp overlap
DDIT3 1 dataset
ChIP K562 ENCFF341NJI 171 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 171 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
FOXA1 2 datasets
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 151 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 107 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 239 bp overlap
ChIP DE DE-FOXA2-2 239 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 223 bp overlap
FOXJ2 2 datasets
ChIP K562 ENCFF457GZC 153 bp overlap
ChIP K562 ENCFF457GZC 239 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR302AWT.FOXK2.K-562 92 bp overlap
ChIP K562 ENCFF245WKP 171 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 127 bp overlap
ChIP DE DE-GATA4-2 239 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 178 bp overlap
ChIP DE DE-GATA6-2 239 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 239 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 201 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 192 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 58 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 236 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 217 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 239 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 239 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 111 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 100 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 102 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 148 bp overlap
HLTF 1 dataset
ChIP K562 ENCFF783OCM 166 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 116 bp overlap
ChIP K562 ENCFF771OHZ 146 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 158 bp overlap
LARP7 1 dataset
ChIP K562 ENCFF550RPP 173 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 138 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR107GRP.MLLT1.K-562 111 bp overlap
ChIP K562 ENCFF074XRJ 177 bp overlap
MNT 1 dataset
ChIP K562 ENCFF342DNS 239 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 132 bp overlap
MTA2 3 datasets
ChIP K-562 ENCSR411UYA.MTA2.K-562 91 bp overlap
ChIP K-562 ENCSR113LAS.MTA2.K-562 83 bp overlap
ChIP K562 ENCFF441KCP 179 bp overlap
MYNN 1 dataset
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 141 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 239 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 127 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 239 bp overlap
PHB2 1 dataset
ChIP K-562 ENCSR924GXX.PHB2.K-562 139 bp overlap
PHF20 1 dataset
ChIP K562 ENCFF436SIT 239 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 239 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 183 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 163 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 239 bp overlap
PYGO2 1 dataset
ChIP K562 ENCFF414HHT 192 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 116 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 225 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 114 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF284DKY 115 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 100 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 153 bp overlap
ZC3H8 1 dataset
ChIP K562 ENCFF462ENR 172 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 223 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 112 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 127 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 76 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 154 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 121 bp overlap
ZNF354B 1 dataset
ChIP K562 ENCFF120AXZ 113 bp overlap
ZNF410 1 dataset
ChIP K-562 GSE97661.ZNF410.K-562 151 bp overlap
ZNF639 2 datasets
ChIP K-562 ENCSR949NVY.ZNF639.K-562 125 bp overlap
ChIP K562 ENCFF267NLX 239 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 170 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 172 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 205 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 206 bp overlap