chr1 : 230,984,729 – 230,985,047
318 bp 107 TFs 2 linked genes
This 318 bp open chromatin element is linked to ARV1 and TTC13 and is bound by 107 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARV1 5.6 kb Proximal Proximity
TTC13 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:230,979,729 – 230,990,047
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 142 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 318 bp overlap
ARNT 1 dataset
ChIP K562 ENCFF291CXK 133 bp overlap
ATF1 3 datasets
ChIP K562 ENCFF817JQF 318 bp overlap
ChIP K562 ENCFF817JQF 109 bp overlap
ChIP K562 ENCFF980NSF 224 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 218 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 165 bp overlap
BCOR 2 datasets
ChIP K562 ENCFF343XWA 262 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 154 bp overlap
CAMTA2 1 dataset
ChIP K562 ENCFF975FJR 117 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 237 bp overlap
CBFA2T3 2 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 69 bp overlap
ChIP K562 ENCFF673OEZ 318 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 121 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 131 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 202 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 200 bp overlap
ChIP K562 ENCFF189VBN 211 bp overlap
ChIP K562 ENCFF194QGF 82 bp overlap
ChIP K562 ENCFF584CTB 287 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 318 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 318 bp overlap
DDIT3 1 dataset
ChIP K562 ENCFF341NJI 67 bp overlap
DPF2 3 datasets
ChIP K562 ENCFF739JDE 269 bp overlap
ChIP K562 ENCFF739JDE 67 bp overlap
ChIP K562 ENCFF775HUO 318 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 269 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 213 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 196 bp overlap
ESRRA 1 dataset
ChIP K562 ENCFF968PEP 298 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 268 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 116 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 318 bp overlap
ChIP DE DE-FOXA2-2 318 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 202 bp overlap
FOXJ2 2 datasets
ChIP K562 ENCFF457GZC 231 bp overlap
ChIP K562 ENCFF457GZC 249 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 262 bp overlap
FOXM1 2 datasets
ChIP K562 ENCFF255RHV 221 bp overlap
ChIP K562 ENCFF255RHV 50 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 64 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 191 bp overlap
ChIP K562 ENCFF094CMK 211 bp overlap
ChIP erythroblast ENCFF867JAR 100 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 165 bp overlap
GATA2 5 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 136 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 84 bp overlap
ChIP K562 ENCFF544PCK 222 bp overlap
ChIP K562 ENCFF830LLA 312 bp overlap
ChIP K562 ENCFF830LLA 97 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 318 bp overlap
ChIP DE DE-GATA4-2 318 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 318 bp overlap
ChIP DE DE-GATA6-2 318 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 318 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 318 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 318 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 318 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 318 bp overlap
GATAD2B 1 dataset
ChIP K562 ENCFF696VMK 295 bp overlap
GMEB1 2 datasets
ChIP K562 ENCFF705LHX 318 bp overlap
ChIP K562 ENCFF705LHX 92 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 318 bp overlap
HDAC1 3 datasets
ChIP K562 ENCFF928TKZ 310 bp overlap
ChIP K562 ENCFF968WBH 288 bp overlap
ChIP K562 ENCFF968WBH 151 bp overlap
HDAC2 2 datasets
ChIP K562 ENCFF744ALD 213 bp overlap
ChIP K562 ENCFF919OMP 146 bp overlap
HDAC3 1 dataset
ChIP K562 ENCFF713GIR 309 bp overlap
HES1 1 dataset
ChIP K562 ENCFF919JVU 286 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 121 bp overlap
ChIP K562 ENCFF317JJX 111 bp overlap
ID3 1 dataset
ChIP K562 ENCFF170RNI 302 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 273 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 190 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 216 bp overlap
ChIP K562 ENCFF133OLU 240 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 225 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 91 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 318 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 156 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF198WCP 224 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 99 bp overlap
MBD2 1 dataset
ChIP K562 ENCFF217VLV 263 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 99 bp overlap
MNT 2 datasets
ChIP K562 ENCFF820IGH 318 bp overlap
ChIP K562 ENCFF820IGH 103 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 132 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 296 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 243 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 131 bp overlap
ChIP H1 ENCFF747ZPQ 182 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 318 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 131 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 151 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 74 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
ChIP hESC GSE20650.NANOG.hESC 170 bp overlap
ChIP hESC GSE18292.NANOG.hESC 58 bp overlap
NBN 1 dataset
ChIP K562 ENCFF146YTY 134 bp overlap
NCOA1 2 datasets
ChIP K562 ENCFF962VHQ 121 bp overlap
ChIP K562 ENCFF962VHQ 57 bp overlap
NCOR1 4 datasets
ChIP K562 ENCFF359DNT 183 bp overlap
ChIP K562 ENCFF788MPU 235 bp overlap
ChIP K562 ENCFF866HRM 262 bp overlap
ChIP LS180 GSE39277.NCOR1.LS180 101 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 198 bp overlap
NR2F1 2 datasets
ChIP K562 ENCFF221HJH 253 bp overlap
ChIP K562 ENCFF221HJH 126 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 122 bp overlap
ChIP K562 ENCFF004YPK 173 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 171 bp overlap
PHB2 1 dataset
ChIP K562 ENCFF772SGA 93 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 193 bp overlap
ChIP K562 ENCFF514URW 134 bp overlap
ChIP K562 ENCFF836GHX 197 bp overlap
POU5F1 6 datasets
ChIP GM23338 ENCFF333SNB 240 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 278 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 130 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 71 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 123 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 318 bp overlap
RAD21 1 dataset
ChIP K562 ENCFF066JWO 236 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 247 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 236 bp overlap
REST 2 datasets
ChIP K562 ENCFF430APM 179 bp overlap
ChIP K562 ENCFF685YZN 84 bp overlap
RNF2 3 datasets
ChIP K562 ENCFF061ATI 295 bp overlap
ChIP K562 ENCFF653BQJ 253 bp overlap
ChIP K562 ENCFF653BQJ 57 bp overlap
SKIL 1 dataset
ChIP K562 ENCFF560QSF 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 97 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 262 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 228 bp overlap
SMARCA4 2 datasets
ChIP K562 ENCFF316MCJ 316 bp overlap
ChIP K562 ENCFF316MCJ 76 bp overlap
SMARCC2 1 dataset
ChIP K562 ENCFF368GSR 318 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 223 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 318 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 315 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 240 bp overlap
ChIP K562 ENCFF088XXV 123 bp overlap
ChIP K562 ENCFF365HQT 228 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 4 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 114 bp overlap
ChIP K562 ENCFF620GMX 266 bp overlap
ChIP K562 ENCFF661CCK 72 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 124 bp overlap
TBL1XR1 1 dataset
ChIP K562 ENCFF899VEC 251 bp overlap
TCF12 2 datasets
ChIP K562 ENCFF909RDY 231 bp overlap
ChIP K562 ENCFF931DJY 256 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 205 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF616RIL 244 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 318 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 318 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 131 bp overlap
ZC3H8 1 dataset
ChIP K562 ENCFF495URH 106 bp overlap
ZEB2 1 dataset
ChIP K562 ENCFF975RXS 256 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 199 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF169LZT 318 bp overlap
ChIP K562 ENCFF536AJO 293 bp overlap
ZMIZ1 1 dataset
ChIP K562 ENCFF647WJV 252 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 56 bp overlap
ChIP K562 ENCFF352SDL 204 bp overlap
ZNF212 1 dataset
ChIP K562 ENCFF640NBC 78 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 318 bp overlap
ZNF395 2 datasets
ChIP K562 ENCFF464EIT 318 bp overlap
ChIP K562 ENCFF464EIT 173 bp overlap
ZNF397 1 dataset
ChIP K562 ENCFF203WSD 97 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 190 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 70 bp overlap
ZNF766 2 datasets
ChIP K562 ENCFF348LDO 318 bp overlap
ChIP K562 ENCFF348LDO 318 bp overlap
ZSCAN29 2 datasets
ChIP K562 ENCFF797SOU 318 bp overlap
ChIP K562 ENCFF842XOY 274 bp overlap