chr15 : 24,696,121 – 24,697,106
985 bp 21 TFs 3 linked genes
This 985 bp open chromatin element is linked to SNRPN, SNURF, and SNHG14 and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SNRPN 258.4 kb Distal Multiome
SNURF 258.5 kb Distal Multiome
SNHG14 285.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:24,691,121 – 24,702,106
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 312 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 114 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 283 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 663 bp overlap
ChIP DE DE-FOXA2-2 650 bp overlap
ChIP DE DE-FOXA2-2 256 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 874 bp overlap
ChIP DE DE-GATA4-2 985 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 985 bp overlap
ChIP DE DE-GATA6-2 985 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 608 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 476 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 476 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 519 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 580 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 289 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 666 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 304 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 294 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 491 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 297 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 624 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 528 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 985 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 891 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 869 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 578 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 786 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 985 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 894 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 985 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 135 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 964 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 126 bp overlap