chr1 : 233,228,052 – 233,228,602
550 bp 34 TFs 4 linked genes
This 550 bp open chromatin element is linked to 4 target genes and is bound by 34 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCNX2 67.4 kb Distal Multiome
MAP3K21 99.4 kb Distal Multiome
NTPCR 277.7 kb Distal Multiome
SIPA1L2 598.1 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:233,223,052 – 233,233,602
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 367 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 264 bp overlap
CTCF 29 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 267 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 367 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 152 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 126 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 156 bp overlap
ChIP A-549 ENCSR000BHV.CTCF.A-549 111 bp overlap
ChIP A549 ENCFF434LUY 164 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 198 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 123 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 177 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 88 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 217 bp overlap
ChIP MCF-7 ENCFF162GNE 167 bp overlap
ChIP MCF-7 ENCFF198DQX 222 bp overlap
ChIP MCF-7 ENCFF494VXA 222 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 115 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 180 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 161 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 173 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 170 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 139 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 171 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 215 bp overlap
ChIP endodermal cell ENCFF471YCZ 273 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 138 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 221 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 386 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 140 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 55 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 550 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 550 bp overlap
ChIP DE DE-GATA4-2 550 bp overlap
ChIP foregut GSE117136.GATA4.foregut 470 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 430 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 550 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 547 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 459 bp overlap
ChIP foregut GSE117136.GATA6.foregut 478 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 272 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NOTCH1 1 dataset
ChIP CUTLL1 GSE29600.NOTCH1.CUTLL1 95 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 199 bp overlap
PLAG1 1 dataset
Motif DE_72h DE_72h-PLAG1_MA0163.1 14 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RAD21 4 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 172 bp overlap
ChIP A549 ENCFF047SFC 176 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 207 bp overlap
ChIP HCT116 ENCFF568PEO 246 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 550 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 197 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 137 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 535 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 528 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 174 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 174 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
VEZF1 1 dataset
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap