chr15 : 56,248,336 – 56,248,566
230 bp 24 TFs 2 linked genes
This 230 bp open chromatin element is linked to TEX9 and RFX7 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TEX9 4.4 kb Proximal Proximity
RFX7 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:56,243,336 – 56,253,566
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 143 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 82 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 204 bp overlap
ChIP K562 ENCFF674KTF 230 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 118 bp overlap
CEBPB 2 datasets
ChIP A549 ENCFF235AIY 115 bp overlap
ChIP HeLa-S3 ENCFF722WEG 139 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 62 bp overlap
ChIP K562 ENCFF956TPS 227 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 218 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 230 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 217 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 230 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 191 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 119 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 57 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 162 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 59 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 129 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 81 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 125 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 228 bp overlap
ChIP DE DE-FOXA2-1 230 bp overlap
ChIP DE DE-FOXA2-2 230 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 188 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 230 bp overlap
ChIP DE DE-GATA4-2 230 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 160 bp overlap
ChIP foregut GSE117136.GATA4.foregut 230 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 230 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 199 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 187 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 170 bp overlap
ChIP DE DE-GATA6-1 230 bp overlap
ChIP DE DE-GATA6-2 230 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 230 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 219 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 187 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 206 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 230 bp overlap
ChIP foregut GSE117136.GATA6.foregut 230 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 230 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 170 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 192 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 163 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 214 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 192 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 135 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 112 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 119 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 136 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 124 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 125 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 78 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 67 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 184 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 207 bp overlap