chr15 : 59,785,977 – 59,786,995
1,018 bp 90 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to BNIP2 and GTF2A2 and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BNIP2 97.2 kb Distal Multiome
GTF2A2 129.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:59,780,977 – 59,791,995
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 213 bp overlap
ATF2 1 dataset
ChIP HEK293 ENCFF194VKZ 385 bp overlap
BCL11A 1 dataset
ChIP HEK293 ENCFF294OHB 361 bp overlap
BCL6B 1 dataset
ChIP HEK293 ENCFF555YRB 365 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 262 bp overlap
Crx 2 datasets
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 172 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 237 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 569 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 258 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 4 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 189 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 783 bp overlap
ChIP DE DE-FOXA2-2 923 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 813 bp overlap
ChIP DE DE-GATA4-2 949 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 790 bp overlap
ChIP DE DE-GATA6-2 960 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 823 bp overlap
GLI3 4 datasets
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 408 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 639 bp overlap
GSC 2 datasets
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
INSM1 2 datasets
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 678 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 437 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCFF599UKL 371 bp overlap
MAF 1 dataset
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFF 1 dataset
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_72h DE_72h-MEIS2_MA1640.2 9 bp overlap
Mafb 1 dataset
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR5A1 2 datasets
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NRL 1 dataset
Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap
Nfe2l2 1 dataset
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
OTX1 2 datasets
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
OVOL3 1 dataset
ChIP HEK293 ENCFF898STB 357 bp overlap
PBX2 1 dataset
Motif DE_72h DE_72h-PBX2_MA1113.3 9 bp overlap
PITX1 2 datasets
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 202 bp overlap
POU4F2 1 dataset
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCFF069PHD 233 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
RHOXF1 2 datasets
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 3 datasets
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
Runx1 4 datasets
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 606 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 638 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 845 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 832 bp overlap
TP53 4 datasets
Motif DE_36h DE_36h-TP53_MA0106.3 18 bp overlap
Motif DE_48h DE_48h-TP53_MA0106.3 18 bp overlap
Motif DE_60h DE_60h-TP53_MA0106.3 18 bp overlap
Motif DE_72h DE_72h-TP53_MA0106.3 18 bp overlap
TP73 4 datasets
Motif DE_36h DE_36h-TP73_MA0861.2 16 bp overlap
Motif DE_48h DE_48h-TP73_MA0861.2 16 bp overlap
Motif DE_60h DE_60h-TP73_MA0861.2 16 bp overlap
Motif DE_72h DE_72h-TP73_MA0861.2 16 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 161 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCFF893BGV 337 bp overlap
Vdr 4 datasets
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
Motif DE_48h DE_48h-Vdr_MA0693.4 7 bp overlap
Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
Wt1 2 datasets
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZEB1 4 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 183 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 248 bp overlap
ZNF148 2 datasets
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 239 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 478 bp overlap
ZNF281 6 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF317 2 datasets
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 528 bp overlap
ZNF341 3 datasets
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
Motif DE_72h DE_72h-ZNF341_MA1655.2 8 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 433 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCFF906MQV 239 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 321 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCFF096ELQ 491 bp overlap
ZNF708 3 datasets
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCFF241QRH 364 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 337 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 311 bp overlap
Zic2 3 datasets
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap