chr15 : 59,872,519 – 59,873,058
539 bp 12 TFs 2 linked genes
This 539 bp open chromatin element is linked to BNIP2 and GTF2A2 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BNIP2 183.4 kb Distal Multiome
GTF2A2 215.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:59,867,519 – 59,878,058
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 118 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 357 bp overlap
ChIP hESC GSE26097.EOMES.hESC 126 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 238 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 539 bp overlap
ChIP DE DE-GATA4-2 539 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 205 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 539 bp overlap
ChIP DE DE-GATA6-2 539 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 539 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 539 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 539 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 356 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 310 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 269 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 273 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 362 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 319 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 413 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 327 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 539 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 539 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 539 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 201 bp overlap