chr15 : 99,153,040 – 99,153,478
438 bp 52 TFs 3 linked genes
This 438 bp open chromatin element is linked to SYNM, TTC23, and LRRC28 and is bound by 52 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SYNM 48.2 kb Distal Multiome
TTC23 96.3 kb Distal Multiome
LRRC28 98.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:99,148,040 – 99,158,478
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 66 bp overlap
BARX2 1 dataset
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 290 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 213 bp overlap
FOXA1 1 dataset
ChIP liver ERP002306.FOXA1.liver 175 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 438 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
ChIP liver ENCFF877SFI 338 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 161 bp overlap
FOXA3 1 dataset
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXI1 1 dataset
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 372 bp overlap
ChIP DE DE-GATA4-2 358 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 268 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 275 bp overlap
ChIP DE DE-GATA6-2 305 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 313 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 438 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 438 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 356 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 348 bp overlap
HMBOX1 1 dataset
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
HNF1A 1 dataset
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 159 bp overlap
ChIP liver ENCFF449HPV 401 bp overlap
ChIP liver ERP002306.HNF4A.liver 166 bp overlap
HOXC11 1 dataset
Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
Hand1 1 dataset
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 299 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 438 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 184 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 225 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 205 bp overlap
POU6F1 1 dataset
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
RFX4 1 dataset
Motif DE_48h DE_48h-RFX4_MA0799.3 13 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 392 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 245 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 414 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 438 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 419 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 438 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 438 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 438 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 438 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 192 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 236 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 438 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 177 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 285 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 202 bp overlap
TBX19 1 dataset
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBXT 1 dataset
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
TFEB 1 dataset
Motif DE_48h DE_48h-TFEB_MA0692.2 8 bp overlap
USF1 1 dataset
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 104 bp overlap