Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

34 transcription factors

BCL6B 1 dataset

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 166 bp overlap

CEBPB 1 dataset

ChIP H1 ENCFF871PTR 177 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 61 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 191 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 287 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 486 bp overlap

ChIP DE DE-FOXA2-2 486 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 361 bp overlap

ChIP DE DE-GATA4-2 441 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 323 bp overlap

ChIP DE DE-GATA6-2 439 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 486 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 326 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 354 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 390 bp overlap

GLIS1 2 datasets

Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap

Motif DE_24h DE_24h-GLIS1_MA0735.2 15 bp overlap

GLIS2 2 datasets

Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap

Motif DE_24h DE_24h-GLIS2_MA0736.1 14 bp overlap

GLIS3 2 datasets

Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap

Motif DE_24h DE_24h-GLIS3_MA0737.1 14 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 437 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 271 bp overlap

MYB 2 datasets

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCFF065NZG 234 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 131 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 443 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 284 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 458 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 345 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 269 bp overlap

ChIP hESC GSE18292.NANOG.hESC 206 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 209 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 305 bp overlap

POU5F1 4 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 486 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 334 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 254 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 256 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 335 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 127 bp overlap

Prdm4 2 datasets

Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap

Motif DE_24h DE_24h-Prdm4_MA1647.3 11 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 272 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 334 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 255 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 338 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 233 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 251 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 385 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 258 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 214 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 265 bp overlap

ZIC1 2 datasets

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap

ZIC4 2 datasets

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap

ZIC5 2 datasets

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap

ZNF281 2 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap

Gene	Dist. to TSS	Distance	Link type
NAGPA	179.5 kb	Distal	Multiome
ALG1	179.7 kb	Distal	Multiome
PPL	276.3 kb	Distal	Multiome

Genome Browser