chr16 : 12,775,760 – 12,776,224
464 bp 45 TFs 2 linked genes
This 464 bp open chromatin element is linked to CPPED1 and SHISA9 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CPPED1 27.9 kb Distal Multiome
SHISA9 125.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:12,770,760 – 12,781,224
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 397 bp overlap
ChIP K562 ENCFF492SKF 464 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 52 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 352 bp overlap
ChIP K562 ENCFF938UXQ 375 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 380 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 278 bp overlap
ChIP K562 ENCFF673OEZ 325 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 204 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 146 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 449 bp overlap
EP300 3 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 136 bp overlap
ChIP SK-N-SH ENCFF829RWA 357 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 369 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 196 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 379 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 163 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 187 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 82 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 320 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 205 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 168 bp overlap
ChIP K562 ENCFF094CMK 242 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 339 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 141 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 417 bp overlap
ChIP K562 ENCFF830LLA 440 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 183 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 344 bp overlap
ChIP SK-N-SH ENCFF764OZD 329 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 350 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 256 bp overlap
GATA3 3 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 443 bp overlap
ChIP SH-SY5Y ENCFF475HYF 390 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 378 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 464 bp overlap
ChIP DE DE-GATA4-2 464 bp overlap
ChIP foregut GSE117136.GATA4.foregut 258 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 464 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 464 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 464 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 464 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 356 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 376 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 252 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 212 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 464 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 254 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 458 bp overlap
ChIP K562 ENCFF348IBL 464 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 213 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 330 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 169 bp overlap
ChIP K562 ENCFF464PIV 220 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 238 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 280 bp overlap
ChIP K562 ENCFF320GSD 210 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 208 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 201 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 253 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 323 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 191 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 315 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 241 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 311 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 446 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 372 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 268 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 464 bp overlap
SRF 3 datasets
ChIP Hep-G2 ENCSR000BLV.SRF.Hep-G2 107 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 198 bp overlap
ChIP K562 ENCFF766EOO 391 bp overlap
TAL1 6 datasets
ChIP K-562 GSE107726.TAL1.K-562 216 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 183 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 185 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 153 bp overlap
ChIP K562 ENCFF661CCK 258 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 230 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 184 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 92 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 211 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 211 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 126 bp overlap
ChIP K562 ENCFF255RZG 177 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 181 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 174 bp overlap
ChIP K562 ENCFF361LXT 209 bp overlap