chr16 : 13,070,291 – 13,070,801
510 bp 60 TFs 3 linked genes
This 510 bp open chromatin element is linked to SHISA9, ENSG00000262801, and CPPED1 and is bound by 60 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SHISA9 168.9 kb Distal Multiome
ENSG00000262801 175.7 kb Distal Multiome
CPPED1 266.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:13,065,291 – 13,075,801
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 180 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 510 bp overlap
ChIP H1 ENCFF399KAM 393 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 510 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 307 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 266 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 333 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 135 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 144 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 208 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 381 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 310 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 176 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 289 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 145 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 114 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 304 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 267 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 236 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 233 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 399 bp overlap
ESR1 1 dataset
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 193 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 403 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 263 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 332 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 243 bp overlap
ChIP DE DE-GATA4-2 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 267 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 233 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 339 bp overlap
ChIP DE DE-GATA6-2 337 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 403 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 389 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
ChIP foregut GSE117136.GATA6.foregut 287 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 271 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 312 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 193 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 177 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 389 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 265 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 466 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 455 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 338 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 415 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 136 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 110 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 126 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 210 bp overlap
ChIP H1 ENCFF914VQY 291 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 203 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 125 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 246 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 161 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 495 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 344 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 274 bp overlap
ChIP H1 ENCFF566JSR 200 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 208 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 451 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 262 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 264 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 472 bp overlap
REST 2 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 131 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 326 bp overlap
RFX1 4 datasets
ChIP MCF-7 ENCFF782EZS 302 bp overlap
ChIP MCF-7 ENCFF973QAD 264 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 306 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 169 bp overlap
RFX5 3 datasets
ChIP H1 ENCFF605EGG 302 bp overlap
ChIP HepG2 ENCFF065UQI 275 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 270 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 195 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 185 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 207 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 437 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 391 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 330 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 430 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 253 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 343 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 389 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 360 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 445 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 389 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 150 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 191 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 330 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 437 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 149 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 202 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 246 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 195 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 272 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 109 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 156 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 93 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 64 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 376 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 446 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 407 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 409 bp overlap