chr1 : 243,491,313 – 243,491,839
526 bp 83 TFs 2 linked genes
This 526 bp open chromatin element is linked to SDCCAG8 and CEP170 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SDCCAG8 235.6 kb Distal Multiome
CEP170 236.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:243,486,313 – 243,496,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 3 datasets
ChIP prostate_P13_T GSE130408.AR.prostate_P13_T 160 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 262 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 116 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 367 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 466 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 260 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 192 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 256 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 410 bp overlap
CREBBP 1 dataset
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 232 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 405 bp overlap
CTCF 21 datasets
ChIP 22Rv1 ENCFF466OXN 164 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 126 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 67 bp overlap
ChIP Calu3 ENCFF526MDS 138 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 471 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 296 bp overlap
ChIP HFFc6 ENCFF005CJI 66 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 102 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 62 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 65 bp overlap
ChIP RWPE2 ENCFF911IEE 190 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 86 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 69 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 103 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 127 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 174 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 128 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 108 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 182 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 102 bp overlap
ChIP neural crest cell ENCFF182LWK 64 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 241 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 194 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 270 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 202 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 377 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
GATA2 2 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 203 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 187 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 217 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 181 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 195 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 258 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap
IRF8 1 dataset
Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 380 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 129 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 383 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 248 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 133 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 323 bp overlap
MEIS1 3 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 248 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 262 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 456 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 330 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 234 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 173 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 230 bp overlap
NKX2-2 1 dataset
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
POU5F1 10 datasets
ChIP GM23338 ENCFF333SNB 287 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 506 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 342 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 263 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 197 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 226 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 265 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 283 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 228 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 449 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 526 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 526 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 362 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 185 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 103 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 229 bp overlap
REST 1 dataset
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 232 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 293 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 219 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 122 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 526 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 526 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 252 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 449 bp overlap
SOX2 2 datasets
ChIP OSKM GSE81899.SOX2.OSKM 242 bp overlap
ChIP OSvKM GSE81899.SOX2.OSvKM 296 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 319 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
Stat2 2 datasets
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5a 1 dataset
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 233 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 160 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 173 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 258 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 220 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 301 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 277 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD4 5 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 244 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 246 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 55 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 317 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 236 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 233 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 280 bp overlap
ZIM3 2 datasets
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 157 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 93 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 430 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF669 1 dataset
Motif ES_0h ES_0h-ZNF669_MA1985.1 15 bp overlap
ZNF768 3 datasets
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap