chr17 : 29,930,801 – 29,930,957
156 bp 86 TFs 2 linked genes
This 156 bp open chromatin element is linked to SSH2 and EFCAB5 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SSH2 525 bp At TSS Proximity
EFCAB5 899 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:29,925,801 – 29,935,957
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 130 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 156 bp overlap
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 52 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 156 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 80 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 72 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 116 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 112 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 150 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 125 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 82 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 116 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 145 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 156 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 135 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 67 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 71 bp overlap
ChIP K562 ENCFF584CTB 104 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 156 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 156 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 156 bp overlap
CTCF 9 datasets
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 156 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 156 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 152 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 156 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 63 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 52 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 156 bp overlap
ChIP neuron GSE115407.CTCF.neuron 138 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 53 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 156 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 139 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 106 bp overlap
ELF1 2 datasets
ChIP K562 ENCFF886KFV 156 bp overlap
ChIP K562 ENCFF886KFV 156 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 88 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE95302.ESR1.MCF-7 107 bp overlap
ChIP MCF-7_E2-640min-ERalpha GSE94023.ESR1.MCF-7_E2-640min-ERalpha 124 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 102 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 77 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 124 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 94 bp overlap
ETS1 2 datasets
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 156 bp overlap
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 156 bp overlap
EZH2 1 dataset
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 156 bp overlap
FOXA1 27 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 156 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 156 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 97 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 156 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 123 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 64 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 62 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 76 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 62 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 155 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 58 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 74 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 156 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 79 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 84 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 129 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 121 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 117 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 148 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 73 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 66 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 156 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 80 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 156 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 156 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 156 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 156 bp overlap
FOXA2 6 datasets
ChIP DE DE-FOXA2-1 156 bp overlap
ChIP DE DE-FOXA2-2 156 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 96 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 79 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 60 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 117 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 53 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 65 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 81 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 58 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 109 bp overlap
HDAC1 2 datasets
ChIP HepG2 ENCFF750ZWM 115 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 56 bp overlap
HDAC2 3 datasets
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 156 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 71 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 156 bp overlap
HOXB13 7 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 156 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 59 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 156 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 112 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 79 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 156 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 156 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 156 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 156 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 100 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 156 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 115 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 115 bp overlap
KMT2A 2 datasets
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 128 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 156 bp overlap
KMT2B 1 dataset
ChIP HepG2 ENCFF675TEK 124 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 55 bp overlap
MED1 4 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 156 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 80 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 78 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 156 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 156 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 100 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 132 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 118 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 87 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 156 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 151 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 156 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 156 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 156 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 156 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 156 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 156 bp overlap
ChIP GM12878 ENCFF160JQZ 72 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 156 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 156 bp overlap
RAD21 4 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 97 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 62 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 156 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 62 bp overlap
REST 1 dataset
ChIP K562 ENCFF688UKW 84 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 152 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR000BRM.SIN3A.A-549 107 bp overlap
SMARCA4 8 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 60 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 121 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 58 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 112 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 156 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 156 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 53 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 99 bp overlap
SMARCB1 3 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 75 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 128 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 156 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 156 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 156 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 137 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 156 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 98 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 156 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 156 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 156 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 73 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 139 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 151 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 156 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 156 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCFF007OSW 81 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 156 bp overlap
ChIP K562 ENCFF521DSV 156 bp overlap
ZBTB7A 4 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 156 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 152 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 156 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 101 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 62 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 156 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 74 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 132 bp overlap
ZIC2 1 dataset
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 156 bp overlap
ZIC5 4 datasets
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 156 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 116 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 156 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 156 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 156 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 73 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 156 bp overlap