chr1 : 246,788,840 – 246,789,414
574 bp 150 TFs 2 linked genes
This 574 bp open chromatin element is linked to LINC01341 and ENSG00000293403 and is bound by 150 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01341 at TSS At TSS Proximity
ENSG00000293403 246 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,783,840 – 246,794,414
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
150 transcription factors
Source
Cell type
AGO1 6 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 574 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 574 bp overlap
ChIP HepG2 ENCFF277EOU 539 bp overlap
ChIP HepG2 ENCFF358CXO 539 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 434 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 347 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 432 bp overlap
ChIP HepG2 ENCFF773YDL 432 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 229 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 394 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 553 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 574 bp overlap
BCL11B 2 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 148 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 155 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 499 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 558 bp overlap
BRD2 1 dataset
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 468 bp overlap
BRD4 8 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 226 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 425 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 500 bp overlap
ChIP hESC GSE33281.BRD4.hESC 106 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 275 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 504 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 303 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 574 bp overlap
CBFB 2 datasets
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 196 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 354 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 172 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 340 bp overlap
CTCF 4 datasets
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 128 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 323 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 290 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 265 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 326 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 238 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 263 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 234 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 446 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 177 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 278 bp overlap
EZH2 1 dataset
ChIP WA01 ENCSR000ASY.EZH2.WA01 289 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 277 bp overlap
FOXA2 1 dataset
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 62 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 404 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 478 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 246 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 244 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 270 bp overlap
HNRNPC 1 dataset
ChIP Hep-G2 GSE120104.HNRNPC.Hep-G2 263 bp overlap
HNRNPK 4 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 360 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 286 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 212 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 204 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 333 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 340 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 121 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 426 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 222 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 223 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 244 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 369 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 165 bp overlap
JUN 1 dataset
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 512 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 478 bp overlap
KDM3A 1 dataset
ChIP Hep-G2 ENCSR387JKT.KDM3A.Hep-G2 273 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 482 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 114 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 202 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 90 bp overlap
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 200 bp overlap
KLF7 1 dataset
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 327 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 172 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 574 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 446 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 183 bp overlap
ChIP HepG2 ENCFF507HCX 507 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 360 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 309 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 368 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 360 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 178 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 364 bp overlap
MYCN 1 dataset
ChIP SHEP-21N_DOX_24H GSE80151.MYCN.SHEP-21N_DOX_24H 190 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 192 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 269 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 154 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 385 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 437 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 220 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 531 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 407 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 384 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 384 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 403 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 374 bp overlap
ONECUT1 3 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 69 bp overlap
ChIP HepG2 ENCFF243FIR 145 bp overlap
ChIP liver ERP002306.ONECUT1.liver 109 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCBP1 4 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 393 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 391 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 354 bp overlap
ChIP K-562 ENCSR052PTN.PCBP1.K-562 355 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 486 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 553 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 355 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 234 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 162 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 502 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 213 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 322 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 425 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 491 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 437 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 413 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 274 bp overlap
RAD21 1 dataset
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 127 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 309 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 251 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 180 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 227 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 567 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 505 bp overlap
RUNX1 4 datasets
ChIP AML GSE111821.RUNX1.AML 266 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 308 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 426 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 191 bp overlap
RUVBL2 1 dataset
ChIP Huh-7 GSE97411.RUVBL2.Huh-7 272 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 469 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 240 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 459 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 336 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 505 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 348 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 85 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 381 bp overlap
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 317 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 227 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 493 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 532 bp overlap
SP1 2 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 121 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 159 bp overlap
SP9 1 dataset
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 553 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 555 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 436 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 359 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 362 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 231 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 343 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 219 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 199 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 226 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 151 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 225 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 145 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 574 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 574 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 334 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 201 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 267 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 270 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 164 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 384 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 574 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 502 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 309 bp overlap
ZBED4 2 datasets
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 129 bp overlap
ZBTB7A 2 datasets
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 159 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 276 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 169 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 527 bp overlap
ChIP HepG2 ENCFF016NZF 393 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 536 bp overlap
ChIP HepG2 ENCFF106ELT 325 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF343 1 dataset
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF407 3 datasets
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 351 bp overlap
ChIP HepG2 ENCFF537FDC 535 bp overlap
ChIP HepG2 ENCFF537FDC 445 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF687 2 datasets
ChIP HepG2 ENCFF653WIX 250 bp overlap
ChIP HepG2 ENCFF653WIX 574 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap