chr1 : 246,789,521 – 246,789,886
365 bp 48 TFs 2 linked genes
This 365 bp open chromatin element is linked to ENSG00000293403 and LINC01341 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000293403 at TSS At TSS Proximity
LINC01341 418 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,784,521 – 246,794,886
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 365 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 365 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 132 bp overlap
AR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 198 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 319 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 365 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 365 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 350 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 229 bp overlap
CTCFL 1 dataset
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 102 bp overlap
ChIP BLaER1 ENCFF460KDD 255 bp overlap
FOXA1 1 dataset
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 115 bp overlap
FOXA2 2 datasets
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 129 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 164 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 126 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HOXA9 1 dataset
Motif ES_0h ES_0h-HOXA9_MA0594.3 7 bp overlap
IRF5 1 dataset
Motif ES_0h ES_0h-IRF5_MA1420.1 14 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 224 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 88 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 155 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 365 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 295 bp overlap
ChIP HepG2 ENCFF038CCB 146 bp overlap
MTF1 1 dataset
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
NFKB1 1 dataset
Motif ES_0h ES_0h-NFKB1_MA0105.4 13 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 69 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 153 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 183 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
Motif ES_0h ES_0h-PROX1_MA0794.1 12 bp overlap
RBM39 2 datasets
ChIP HepG2 ENCFF084YZE 271 bp overlap
ChIP HepG2 ENCFF084YZE 68 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 346 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 206 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 212 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 92 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 124 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 186 bp overlap
ZNF407 1 dataset
ChIP HepG2 ENCFF537FDC 53 bp overlap