chr17 : 75,041,736 – 75,042,280
544 bp 108 TFs 3 linked genes
This 544 bp open chromatin element is linked to RN7SL573P, ATP5PD, and KCTD2 and is bound by 108 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RN7SL573P at TSS At TSS Proximity
ATP5PD 4.7 kb Proximal Proximity
KCTD2 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:75,036,736 – 75,047,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_24h DE_24h-ALX3_MA0634.2 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD2.MV4-11_DMSO 144 bp overlap
BRD4 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 164 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 219 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 167 bp overlap
ChIP BLaER1 ENCFF364PUR 63 bp overlap
DMRTA1 1 dataset
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
DRGX 1 dataset
Motif DE_24h DE_24h-DRGX_MA1481.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
EMX1 1 dataset
Motif DE_24h DE_24h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_24h DE_24h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_24h DE_24h-EN1_MA0027.3 6 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 292 bp overlap
EVX1 1 dataset
Motif DE_24h DE_24h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_24h DE_24h-EVX2_MA0888.2 6 bp overlap
Elf5 1 dataset
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-2 280 bp overlap
Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap
FOXI1 1 dataset
Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap
Foxl2 1 dataset
Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 273 bp overlap
GSX1 1 dataset
Motif DE_24h DE_24h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_24h DE_24h-GSX2_MA0893.3 7 bp overlap
HOXA1 1 dataset
Motif DE_24h DE_24h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_24h DE_24h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXA6 1 dataset
Motif DE_24h DE_24h-HOXA6_MA1497.2 7 bp overlap
HOXB1 1 dataset
Motif DE_24h DE_24h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_24h DE_24h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_24h DE_24h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_24h DE_24h-HOXB5_MA0904.3 6 bp overlap
HOXB6 1 dataset
Motif DE_24h DE_24h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_24h DE_24h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_24h DE_24h-HOXB8_MA1502.2 7 bp overlap
HOXC8 1 dataset
Motif DE_24h DE_24h-HOXC8_MA1505.2 6 bp overlap
HOXD8 1 dataset
Motif DE_24h DE_24h-HOXD8_MA0910.3 7 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
ISX 1 dataset
Motif DE_24h DE_24h-ISX_MA0654.2 6 bp overlap
LHX5 1 dataset
Motif DE_24h DE_24h-LHX5_MA1519.2 7 bp overlap
Lhx4 1 dataset
Motif DE_24h DE_24h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_24h DE_24h-Lhx8_MA0705.2 6 bp overlap
MAF 1 dataset
Motif DE_24h DE_24h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_24h DE_24h-MAFA_MA1521.2 13 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 176 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 147 bp overlap
MEF2A 1 dataset
Motif DE_24h DE_24h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_24h DE_24h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_24h DE_24h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
MEOX1 1 dataset
Motif DE_24h DE_24h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_24h DE_24h-MEOX2_MA0706.2 7 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MIXL1 1 dataset
Motif DE_24h DE_24h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_24h DE_24h-MNX1_MA0707.3 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 259 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 211 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 172 bp overlap
NKX6-2 1 dataset
Motif DE_24h DE_24h-NKX6-2_MA0675.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_24h DE_24h-Nr2e3_MA0164.2 6 bp overlap
PDX1 1 dataset
Motif DE_24h DE_24h-PDX1_MA0132.3 6 bp overlap
POLR2A 1 dataset
ChIP HepG2 ENCFF252NAR 285 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 456 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 481 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA0628.2 6 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 233 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
PRRX1 1 dataset
Motif DE_24h DE_24h-PRRX1_MA0716.2 6 bp overlap
RAX2 1 dataset
Motif DE_24h DE_24h-RAX2_MA0717.2 6 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 476 bp overlap
Runx1 1 dataset
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
SHOX 1 dataset
Motif DE_24h DE_24h-SHOX_MA0630.2 6 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 320 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 131 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 341 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 438 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 544 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
Shox2 1 dataset
Motif DE_24h DE_24h-Shox2_MA0720.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 204 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 257 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TEAD1 1 dataset
Motif DE_24h DE_24h-TEAD1_MA0090.4 9 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 492 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 461 bp overlap
TLX2 1 dataset
Motif DE_24h DE_24h-TLX2_MA1577.2 6 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_24h DE_24h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif DE_24h DE_24h-VAX2_MA0723.3 6 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 228 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF189 1 dataset
Motif DE_24h DE_24h-ZNF189_MA1725.2 9 bp overlap
ZNF547 1 dataset
Motif DE_24h DE_24h-ZNF547_MA2334.1 13 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZSCAN16 1 dataset
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
mix-a 1 dataset
Motif DE_24h DE_24h-mix-a_MA0621.2 7 bp overlap