chr18 : 653,638 – 653,917
279 bp 21 TFs 3 linked genes
This 279 bp open chromatin element is linked to ENSG00000263727, TYMSOS, and TYMS and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000263727 3.3 kb Proximal Proximity
TYMSOS 3.7 kb Proximal Proximity
TYMS 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:648,638 – 658,917
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 119 bp overlap
CTCF 19 datasets
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 205 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 113 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 182 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 182 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 239 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 241 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 83 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 111 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 154 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 177 bp overlap
ChIP MCF-7 ENCFF162GNE 164 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 192 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 129 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 200 bp overlap
ChIP endodermal cell ENCFF471YCZ 275 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 217 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 186 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 122 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 212 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 279 bp overlap
ChIP DE DE-FOXA2-2 279 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 279 bp overlap
ChIP DE DE-GATA4-2 279 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 279 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 279 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 100 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 56 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 158 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF736SLT 279 bp overlap
ChIP HepG2 ENCFF736SLT 159 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 276 bp overlap
RAD21 2 datasets
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 116 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 220 bp overlap
SPI1 16 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 203 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 196 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 195 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 232 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 152 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
ChIP HL-60 ENCFF645GBT 222 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 155 bp overlap
ChIP K562 ENCFF410ORC 187 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 162 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 211 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 129 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 126 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 203 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 166 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 106 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 220 bp overlap
ZNF24 7 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 211 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 188 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 89 bp overlap
ChIP K562 ENCFF497GLV 178 bp overlap
ChIP K562 ENCFF615YYW 146 bp overlap
ChIP K562 ENCFF781QQQ 144 bp overlap
ChIP K562 ENCFF877JCX 153 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 112 bp overlap